Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00631 and RBAM_003720
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:22
# Commandline: needle
# -asequence dna-align/BSNT_00631___ycxC.1.9828.seq
# -bsequence dna-align/RBAM_003720___ycxC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00631___ycxC-RBAM_003720___ycxC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00631___ycxC-RBAM_003720___ycxC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00631___ycxC
# 2: RBAM_003720___ycxC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1007
# Identity: 673/1007 (66.8%)
# Similarity: 673/1007 (66.8%)
# Gaps: 112/1007 (11.1%)
# Score: 2223.5
#
#
#=======================================
BSNT_00631___ 1 ATGGTTAAACATCAGCAA--------GCCCCCGCTTATATAGCGGCTATT 42
|||.||||.|| || ||..|.|||||..|.||.||.|||
RBAM_003720__ 1 ATGATTAATCA-----AAACCGTTTGGCTGCTGCTTACCTCGCTGCCATT 45
BSNT_00631___ 43 TTATATTCGTTCATTATCGGTTTATCCTTTCTATTCGTAAAAATCGCACT 92
|||.||.||.|.|||||||||||.||||||.||||.||.||.||.||.||
RBAM_003720__ 46 TTAAATGCGCTGATTATCGGTTTTTCCTTTATATTTGTCAAGATTGCGCT 95
BSNT_00631___ 93 GCAAACAGCAGAGCCGTTTGATATTTTGGCGCATCGGTTCAC-------- 134
.|.|.|.||..|.|||||||||||.|||||.|||||||||||
RBAM_003720__ 96 TCGATCCGCCAATCCGTTTGATATATTGGCTCATCGGTTCACAGCGGCCT 145
BSNT_00631___ 135 -CAT---TGC---GTTTGCTGCGGCGACTGTACCGATCTTATTCGGCTGG 177
||| ||| |.||.||| |.||||||||||||
RBAM_003720__ 146 TCATCTGTGCAATGCTTCCTG---------------TTTTATTCGGCTGG 180
BSNT_00631___ 178 GTAAAGCTATCAATCCGCGTAAAGGACGTCATTGCCATTTTGCCGCTCGC 227
.|.||.||.||..||.||...|||.|.||..|.||.||.|||||..|.||
RBAM_003720__ 181 ATCAAACTGTCCGTCAGCTGGAAGAATGTGCTGGCGATCTTGCCTTTGGC 230
BSNT_00631___ 228 CCTGCTGTATCCCGCGTTATTTTTCAGCTTTCAGGCATTCGGCCTTGTGT 277
|||..|.|||||.||.||.||||||||.||||||||.|||||||||.|||
RBAM_003720__ 231 CCTTTTATATCCGGCTTTGTTTTTCAGTTTTCAGGCGTTCGGCCTTTTGT 280
BSNT_00631___ 278 ACTCGTCCTCCTCTGAAGCGGGAATTATTCAGGCAGCCATTCCGATTTTC 327
|.||.||.||.||.|||||.||.||.|||||.||.|||||.||||||||.
RBAM_003720__ 281 ATTCTTCATCATCGGAAGCCGGTATCATTCAAGCCGCCATCCCGATTTTT 330
BSNT_00631___ 328 ACGATGGTCTTTGCCGCTTATGTTTTAAAGGAACGCCCAACGTGGACGCA 377
||||||.|.|||.|..||||..|||||||||||||.||.||.|||.||||
RBAM_003720__ 331 ACGATGCTGTTTTCGTCTTACTTTTTAAAGGAACGTCCGACATGGGCGCA 380
BSNT_00631___ 378 AAAGGGGTTCACGGTTTTATCCGTTGCCGGCGTCATGTTTATTTTTGTGA 427
||||||.|||||.....|.||.||.|||||.||..|.||||||||....|
RBAM_003720__ 381 AAAGGGATTCACATGCCTGTCAGTGGCCGGGGTGGTATTTATTTTCACAA 430
BSNT_00631___ 428 TGAAAGGCGTTGACGTGGAATCAGCCAGCTTAAAAGGGTCTTTGCTGATC 477
|||||||.||...||.||||||.||.||.||.|||||..||||.||||||
RBAM_003720__ 431 TGAAAGGGGTGTCCGCGGAATCGGCGAGTTTTAAAGGTGCTTTCCTGATC 480
BSNT_00631___ 478 CTATTGTCCGCTTTGTCCTCAGCGATGTACAATACTGCTGCCAGAAAAAT 527
||.||||||||..|||||||.||..|.||||||||.||.||.|||...||
RBAM_003720__ 481 CTGTTGTCCGCGCTGTCCTCCGCCCTTTACAATACGGCAGCGAGACGCAT 530
BSNT_00631___ 528 GACGCAGCG--GTTCAAGCTGACCGAGCTCACCTACATCATGTCAGCCAT 575
|||.|.||| .|||| .||...|||||.||||....||||||.||.||
RBAM_003720__ 531 GACCCTGCGTTTTTCA--TTGGGTGAGCTGACCTGGTGCATGTCTGCGAT 578
BSNT_00631___ 576 CGGCTTTG--TCGTCTTCAACGCCATCGCCCTTGTGCGTCATGGAGCGGC 623
|||||||| || |||||||..||||||.||..|.||.||.|||||||.
RBAM_003720__ 579 CGGCTTTGCTTC--CTTCAACTGCATCGCTCTCTTCCGGCACGGAGCGGA 626
BSNT_00631___ 624 GGGAACAGTC-GGCACTTATTTTCTGCCGTTCCGGGAGCCCGGCTTCGTT 672
.|||||..|| |||| .|||||||||||.|||||.||.|||||.| ||
RBAM_003720__ 627 AGGAACGATCGGGCA-GTATTTTCTGCCCTTCCGCGATCCCGGTT---TT 672
BSNT_00631___ 673 CTC---GCCATTGTGTATTTGGGCGTGCTGTCTTCACTTGTCACTTCATT 719
.|| ||.|||.|||||||.|||.|..|||||||.||..|.||.|||||
RBAM_003720__ 673 ATCGCAGCGATTCTGTATTTAGGCATTTTGTCTTCTCTCATTACATCATT 722
BSNT_00631___ 720 TCTGTCTAACTATACGCTGTCGCGA-ATTGAGGCGTTTAAAATGAGTGCT 768
..||||.|||||..||||||| |.| |||||.||||||||.|||||.||.
RBAM_003720__ 723 GATGTCAAACTACGCGCTGTC-CAAGATTGAAGCGTTTAAGATGAGCGCC 771
BSNT_00631___ 769 TTTAATCATGTATCTACCATTGTGACGATGATTGCAGGAGTTATGATTCT 818
|||||..||.|.||...|||.|||||||||.||||.||.||..|..||||
RBAM_003720__ 772 TTTAACAATTTGTCCGTCATCGTGACGATGCTTGCGGGTGTCCTCGTTCT 821
BSNT_00631___ 819 CAACGAAAGCCTGGCCTGGTATCATCTTGCCGGGGCTGTTTGTATTATGA 868
|.|.||....||...||||||||||.|.|||||.||.||.|||||..|.|
RBAM_003720__ 822 CCATGAGTCACTCCGCTGGTATCATATCGCCGGCGCCGTCTGTATCGTCA 871
BSNT_00631___ 869 TTGGCGTGGTGGGGAGCAAT--ATCAATCTGGA-----GAAAAAAA-CAA 910
|.||.||..||||.|||||| .||| ||| |||||||| ||
RBAM_003720__ 872 TCGGAGTCTTGGGAAGCAATGCTTCA----GGACGGCGGAAAAAAAGCA- 916
BSNT_00631___ 911 AGCGCCCTGGTATGCCTGCA-----AAAAAATGA---------------- 939
|||..|..|| |||||||||
RBAM_003720__ 917 ----------TATTACGACATAGGGAAAAAATGAAAGGAAACAAAGACGG 956
BSNT_00631___ 939 ------- 939
RBAM_003720__ 957 AATATGA 963
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