Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00633 and RBAM_003730

See Amino acid alignment / Visit BSNT_00633 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:22
# Commandline: needle
#    -asequence dna-align/BSNT_00633___ycxD.1.9828.seq
#    -bsequence dna-align/RBAM_003730___ycxD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00633___ycxD-RBAM_003730___ycxD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00633___ycxD-RBAM_003730___ycxD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00633___ycxD
# 2: RBAM_003730___ycxD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1366
# Identity:     961/1366 (70.4%)
# Similarity:   961/1366 (70.4%)
# Gaps:          86/1366 ( 6.3%)
# Score: 3248.5
# 
#
#=======================================

BSNT_00633___      1 ATGGAGAAATATATGAGTCTATTAA--TGAGGATAGA---GGAGA---TG     42
                     |||||.||.||||||        ||  |||.||||||   |||||   |.
RBAM_003730__      1 ATGGAAAAGTATATG--------AACGTGATGATAGAAGTGGAGAGTCTC     42

BSNT_00633___     43 ATGCAAAGCACCGCCTATCAAGAAGGAGACAGGCTTCCATCTATCCGTCA     92
                     ||..||.||..|.|.|.|||.|||||.|...||||.||.||||||.|.||
RBAM_003730__     43 ATTGAAGGCGGCACTTTTCAGGAAGGGGCGCGGCTGCCTTCTATCAGGCA     92

BSNT_00633___     93 GCTGTCCGCCCGCTACCAAGTCAGCAAAAGCACAGTGATCCGCGCGCTGC    142
                     ||||.|||..||.|..||.|||||.||||||||.||.|||||.|||||.|
RBAM_003730__     93 GCTGGCCGAGCGTTTTCACGTCAGTAAAAGCACCGTCATCCGTGCGCTTC    142

BSNT_00633___    143 AGGAGCTGGAAAAGCGCCACCTTATCTATTCTGTTCCGAAAAGCGGCTAT    192
                     |||||||.|||||.||.|||.||||.|||.|.||.||||||||||||||.
RBAM_003730__    143 AGGAGCTTGAAAAACGGCACATTATTTATGCCGTGCCGAAAAGCGGCTAC    192

BSNT_00633___    193 TATATTGTGAAAAA-GACAGGGAAATCAAGAAGCGGG--CAGCCTGGCCC    239
                     |||.||.|.||||| ||||   |||...||.||||.|  ||..|.||...
RBAM_003730__    193 TATCTTATTAAAAATGACA---AAAAGCAGGAGCGAGAACAAACAGGTAT    239

BSNT_00633___    240 CATCGACTTTGCCACATCTGCGCCGGATCCAGATGTGTTTCCGTATCTTG    289
                     |||.||.|||||..|.||.||||||||.||.|||.|.||||||||.|..|
RBAM_003730__    240 CATTGATTTTGCAGCCTCGGCGCCGGACCCTGATATTTTTCCGTACCGCG    289

BSNT_00633___    290 ATTTTCAGCACTGTATCAACAAAGCGATTGATACATACAAAAACGATTTG    339
                     |.||||||||.||.|||||||||||.|||||||..||.|||||.||||||
RBAM_003730__    290 ACTTTCAGCATTGCATCAACAAAGCCATTGATATGTATAAAAATGATTTG    339

BSNT_00633___    340 TTTATTTATGGGACGCCAAAGGGGCTTCCCTCACTCATCCGCGTACTCCG    389
                     ||.|||||.||.|||||..||||||||||.||..|.|||||.||.||.|.
RBAM_003730__    340 TTCATTTACGGCACGCCGCAGGGGCTTCCGTCTTTAATCCGGGTGCTTCA    389

BSNT_00633___    390 AAAGCTCTTGGCCACTCAACAGGTATTTGCGGATGAACGGCATATTTTCA    439
                     .|.|||.||..||..|.|.|||||||||||..|.||.|||.|.|||||.|
RBAM_003730__    390 GACGCTGTTATCCGATTATCAGGTATTTGCAAAAGAGCGGAACATTTTTA    439

BSNT_00633___    440 TTACATCAGGTGTCCAGCAGGCGTTATCCTTGCTTTGTGCCATGCCGTTC    489
                     |.||.||.|||||.|||||||||||||||.||||.|.|...||||||||.
RBAM_003730__    440 TCACCTCGGGTGTGCAGCAGGCGTTATCCCTGCTGTCTCTGATGCCGTTT    489

BSNT_00633___    490 CCAAATGGGAAAGAGAAGATCGCCATTGAACAGCCGGGCTACCATTTGAT    539
                     ||.||.||.|||.|||||||....||.||||||||||||||.|||.||||
RBAM_003730__    490 CCGAACGGAAAAAAGAAGATTTTAATCGAACAGCCGGGCTATCATCTGAT    539

BSNT_00633___    540 GGTCGAACAGCTTGAGACGCTTGGGATTCCCGCTATCGGGGTGAAACGAA    589
                     |||.||.||||||||..||||..|..|||||||...|||..|.|||||.|
RBAM_003730__    540 GGTGGAGCAGCTTGAAGCGCTGCGCCTTCCCGCCTGCGGCATTAAACGGA    589

BSNT_00633___    590 CGGAAGAAGGGCTTGATATAGCCGAGGTTGAGCGGTTATTTCAAACAGAA    639
                     |||..||.|||||||||||.||.||.||.||||||.|.|||||.||.||.
RBAM_003730__    590 CGGCTGAGGGGCTTGATATGGCGGAAGTCGAGCGGCTGTTTCAGACGGAG    639

BSNT_00633___    640 TCGATTAAATTTTTTTATACGATGCCGCGCTTCCATAACCCGCTTGGCTA    689
                     ...|||||.||||||||.||||||||.||.||.|||||.|||||.|||..
RBAM_003730__    640 GGAATTAAGTTTTTTTACACGATGCCCCGATTTCATAATCCGCTCGGCAG    689

BSNT_00633___    690 CTCATTGTCAGAGCGTGATAAACAGGAGCTTGTGAGACTGGCAGAAGCGT    739
                     |||..||.||||..|..|.||||..||||||||..||.|.||.||.||||
RBAM_003730__    690 CTCTCTGACAGAATGGCAAAAACGAGAGCTTGTCCGATTAGCGGAGGCGT    739

BSNT_00633___    740 ATGATGTCTATCTCGTTGAGGATGATTACCTCGGTGATCTGGAGGAAAAT    789
                     ||||.||.|||.|.|||||||||||||.|||.||.|||.|.|||||.|||
RBAM_003730__    740 ATGACGTTTATTTGGTTGAGGATGATTTCCTAGGAGATTTAGAGGACAAT    789

BSNT_00633___    790 AAAAAGGCAGATCCGCTGTACGCATATGATCTGTCCTCACATGTCATCTA    839
                     .|.||||||||.|||||||||||.||.||||||||.||.|..||.||.||
RBAM_003730__    790 CAGAAGGCAGACCCGCTGTACGCCTACGATCTGTCTTCCCGCGTGATTTA    839

BSNT_00633___    840 TTTGAAAAGCTTCTCGAAAATGATGTTCCCCGGCCTTCGCGTGGGGGCGG    889
                     ||||||||||||.|||||||||||.||.||.||.||.||.||.||.||||
RBAM_003730__    840 TTTGAAAAGCTTTTCGAAAATGATTTTTCCGGGGCTGCGTGTTGGAGCGG    889

BSNT_00633___    890 CTGTTTTGCCCGAAGCGCTGACTGACACG---TTCTATGCGTACAAAAAG    936
                     ||||..|.||.||..|||||   |.|.||   |||.||.||||.||||||
RBAM_003730__    890 CTGTGCTCCCGGATTCGCTG---GCCCCGGTTTTCCATACGTATAAAAAG    936

BSNT_00633___    937 CTGAACGACATCGACTGTTCGATGATTTCTCAAGCGG-CATTGGAGATTT    985
                     ||||.|||.|||||||||||||||||.||.||||||| |.|||.|| |.|
RBAM_003730__    937 CTGAGCGATATCGACTGTTCGATGATATCCCAAGCGGCCCTTGAAG-TGT    985

BSNT_00633___    986 ACCTGAAAAGCGGTATGTACGGCAGGCATAAGGAGAAAATCAGAGATTCT   1035
                     |..|.||||||||.||||.|...||||||||.||.||||||.|.|..|||
RBAM_003730__    986 ATATCAAAAGCGGCATGTTCAAAAGGCATAAAGAAAAAATCCGGGCCTCT   1035

BSNT_00633___   1036 TATA-AAGAGCGGTC---GCTGAAGCTTCATCAAGCCATTCAAACACACA   1081
                     ||.| ||.| ||.||   |||   |||.||           ||||.|   
RBAM_003730__   1036 TACAGAACA-CGTTCCGAGCT---GCTCCA-----------AAACGC---   1067

BSNT_00633___   1082 GGCAGCTG--GGAAGCGGCCGCTTTACGTTCTCCAGCGGGCAGGC-ACCC   1128
                         ||||  |||....|.||.|||   ||||      |..|.|| |.|.
RBAM_003730__   1068 ----GCTGCAGGAGTACGACGGTTT---TTCT------GTAAAGCAAACG   1104

BSNT_00633___   1129 TGCATGCACACCCACCTGGTGCTTCCTCAGGA------TCTGCCCGCCTC   1172
                     |..||.||.|||||.||.|||||      |||      .||..||||.||
RBAM_003730__   1105 TCGATCCATACCCATCTCGTGCT------GGAGAAAAGCCTTTCCGCTTC   1148

BSNT_00633___   1173 AAGAGTGATTCATAGACTGAAAAAACAAGGGGTTCTCCTTGAGGCGATAG   1222
                     ||||||..|.||..|.||||||...|||||.||.||..|.|||.||||.|
RBAM_003730__   1149 AAGAGTTGTGCAGCGCCTGAAAGCGCAAGGCGTGCTGGTGGAGCCGATTG   1198

BSNT_00633___   1223 ACCGTCATTATTTATCAGATTATCAGAAAGAAAATCTATTAAAAATCAAT   1272
                     ||.|.|||||..||||.||||.||.||||||||||.|..|.|||.||||.
RBAM_003730__   1199 ACAGCCATTACCTATCGGATTTTCCGAAAGAAAATATCATCAAACTCAAC   1248

BSNT_00633___   1273 ATTTCCAATGTGAAAACGGAAGATATTGAGCGCGGTGTCAAGCTGTTGAT   1322
                     .|.|||||.||.||.||.|..|||||...|||.||..||||..||.|||.
RBAM_003730__   1249 GTGTCCAACGTCAAGACAGGGGATATCACGCGAGGCATCAAAATGCTGAC   1298

BSNT_00633___   1323 GAGCCAT---TTATAA   1335
                     |   .||   ||||||
RBAM_003730__   1299 G---GATTGCTTATAA   1311


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