Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00662 and RBAM_003890

See Amino acid alignment / Visit BSNT_00662 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:24
# Commandline: needle
#    -asequence dna-align/BSNT_00662___gerKB.1.9828.seq
#    -bsequence dna-align/RBAM_003890___gerKB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00662___gerKB-RBAM_003890___gerKB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00662___gerKB-RBAM_003890___gerKB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00662___gerKB
# 2: RBAM_003890___gerKB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1174
# Identity:     781/1174 (66.5%)
# Similarity:   781/1174 (66.5%)
# Gaps:         107/1174 ( 9.1%)
# Score: 2417.0
# 
#
#=======================================

BSNT_00662___      1 ATGGAAAAAGCCAGAATAAGCATAAGGCAGCTGTTTGTCATGATTATCAT     50
                     ||||||||.||.|.|||..|||...|.|||||||||.|.|||||.||..|
RBAM_003890__      1 ATGGAAAATGCGAAAATCGGCACGCGTCAGCTGTTTATTATGATCATTTT     50

BSNT_00662___     51 TTTTGAACTGGGCAGCTCCTTATTGATTACACCGGGATCAATGG-CGGGC     99
                     .||||||.|||||||.||.||||||||..|.|||||..|.|||| |||||
RBAM_003890__     51 GTTTGAATTGGGCAGTTCGTTATTGATCCCGCCGGGCACGATGGCCGGGC    100

BSNT_00662___    100 AGGGATGCTTGGATAGCAGTTTTATTAGGCTGTGCG--ATCGGACTGTTT    147
                      |||||||.|||.|..|.||..|..|.||  |||||  |||||.||....
RBAM_003890__    101 -GGGATGCGTGGCTGTCCGTGCTTCTCGG--GTGCGTTATCGGTCTCGGA    147

BSNT_00662___    148 CTTTTCT--GTTTGTATCAAGGC-ATTTATCAATGTTATCCGAATTCTTC    194
                     |||||||  |||  |||| |||| .|.|||||||.||.|||..|.|||||
RBAM_003890__    148 CTTTTCTACGTT--TATC-AGGCGCTGTATCAATTTTTTCCTGAGTCTTC    194

BSNT_00662___    195 TCCGAAAGAATATATGGATGATATGCTGGGAACCAAGCTGAGCTGGCTGT    244
                     |||||.|||.||.|||.|.||..||.|.||.|...|.|||||||||..|.
RBAM_003890__    195 TCCGAGAGATTACATGAACGAACTGATCGGCAGACATCTGAGCTGGGCGG    244

BSNT_00662___    245 TTTCATTTCTCTATATATTGTACTTTGCCTATAATGCCGCAAGGGTGCTG    294
                     |.||..||||.|||||..|.||.|||||.||||..|||||..|.||..||
RBAM_003890__    245 TCTCGCTTCTTTATATTCTCTATTTTGCTTATATCGCCGCCCGCGTATTG    294

BSNT_00662___    295 CGTGACTTTGGAGAAATGCTGCTGACGTTTGCTTATCATGATACACCTAT    344
                     ||.||.|||||.||||||||..|.||.||.||.||.||.||.||.||.||
RBAM_003890__    295 CGGGATTTTGGCGAAATGCTTGTCACCTTCGCCTACCAGGACACGCCAAT    344

BSNT_00662___    345 CATTATTGTAAATGCTTTATTAATGGTAGTAAGC-ATATATGCCGTAAGA    393
                     ..|.|||||.|||||..|..|.|||.|.| ..|| ||||..||.||.|||
RBAM_003890__    345 TTTAATTGTGAATGCCATGCTGATGATCG-CCGCGATATTCGCGGTCAGA    393

BSNT_00662___    394 AAAGGAATTGAAGTACTCGCACGCGCTGCCGAACTTCTTTTCGGGGTCAT    443
                     ||.|||||||||||..|.||..|.||.|.|||.||.||.||.||..|.||
RBAM_003890__    394 AAGGGAATTGAAGTGATAGCGAGAGCCGGCGAGCTGCTGTTTGGCATTAT    443

BSNT_00662___    444 GTATTTACTGGGCGCGATCGGGCTCGTGCTGATTATTGTCTCAGGCACTA    493
                     ||||||.|||...||..|||||||..|.||.|||||...|||||||||.|
RBAM_003890__    444 GTATTTCCTGACAGCCGTCGGGCTGATCCTCATTATCAGCTCAGGCACGA    493

BSNT_00662___    494 TAGACCCGCACAATT-TAAAGCCGGTTTTGGC-----------AAACGGT    531
                     || |.||.||.|.|| |..||||.|||||.||           .||||||
RBAM_003890__    494 TA-AACCTCAGATTTCTCCAGCCCGTTTTAGCGGAGGGTGCAGGAACGGT    542

BSNT_00662___    532 -ATTTCTCCTATCCTTCACTCTGTTTTCACGCAGACCATGTACGTCCCAT    580
                      ||||            |.||.||.||.|..|||||.||||.|.||||.|
RBAM_003890__    543 CATTT------------ATTCCGTGTTTAAACAGACGATGTTCATCCCGT    580

BSNT_00662___    581 TTGGTGAAGTCGTTTTATTTGTGATGATTTTCCC-TATCCTGAATAACAG    629
                     |.||||||.|..|..|.|||||.||||||||||| |||     .|||.||
RBAM_003890__    581 TCGGTGAATTAATCGTGTTTGTCATGATTTTCCCTTAT-----TTAAAAG    625

BSNT_00662___    630 A----AAAGATGTAAAAAAAATGGGGATGATTGCCATGGCTATT------    669
                     |    |||.|.||.||.||||..|    ||||.|  ||||.|||      
RBAM_003890__    626 ATCGGAAAAAGGTGAAGAAAACCG----GATTTC--TGGCGATTATCATC    669

BSNT_00662___    670 AGCGGATTGGTTGTGGCGCTCACCGTGGCGATTAATATCAGCGTGCTTGA    719
                     |||||..||.||.||||..|..|.||||||||||||||..|.|||||.||
RBAM_003890__    670 AGCGGGCTGTTTTTGGCAATGTCAGTGGCGATTAATATTTGTGTGCTGGA    719

BSNT_00662___    720 TGTTGATCTTACA--CTCAGATCCCAGTTCCCGCTTTTAAGTACGATCCA    767
                     .| |.|.|||| |  |||.|.||.||.||.|||||..|.||.||.||.||
RBAM_003890__    720 CG-TCAACTTA-ATGCTCCGCTCTCAATTTCCGCTGCTGAGCACCATACA    767

BSNT_00662___    768 GACAATCAAGGTCGAAGAATTTTTAGACCGGCTCGATGTCTTTTTTATGC    817
                     ||||||.||.||.|||||.||||||||||||||.|||||||||||.||||
RBAM_003890__    768 GACAATTAAAGTGGAAGAGTTTTTAGACCGGCTGGATGTCTTTTTCATGC    817

BSNT_00662___    818 TGGCGCTGATCATCGGCGGCTTCTTTAAGGTTAGCCTCTACTT--ATATG    865
                     |.|.|||..||||||||||.||.||.||.||.|||||.|  ||  |||||
RBAM_003890__    818 TCGTGCTCGTCATCGGCGGTTTTTTCAAAGTCAGCCTTT--TTACATATG    865

BSNT_00662___    866 CCACTGTGGTTGGGACATCTACGCTCTTTAAGGAAAAGAATCTCTCTCAA    915
                     |...|||.||.||....||.|||||.|||||.|||||.||||..||.||.
RBAM_003890__    866 CGGTTGTCGTGGGCGTGTCCACGCTGTTTAAAGAAAAAAATCCGTCCCAG    915

BSNT_00662___    916 TTGGCTTATCCGATGGGATTGGGCATCTTAATCCTTTCTTTAACGATCGC    965
                     .||||.|..|||.|.||||||||..|..|.||.||.||..|.|..|||||
RBAM_003890__    916 CTGGCCTTCCCGGTCGGATTGGGGGTGCTGATTCTCTCCATCAGCATCGC    965

BSNT_00662___    966 AACTAACTTTTCAGAGCACTTGAACGAAGGCTTGAACGTGGTGCCGCTGT   1015
                     ||..||.|||||.||.|||.||||.||||||||.|||.|.||||||.|.|
RBAM_003890__    966 AAGCAATTTTTCGGAACACATGAATGAAGGCTTAAACATTGTGCCGATCT   1015

BSNT_00662___   1016 ATATTCATTTGCCTTTTCAATTATTGTTTCCGCTCTTTCTGTTTATTGTG   1065
                     ||||||||.|.||.||||||.|..||||.||..|.||.|||.||||..|.
RBAM_003890__   1016 ATATTCATCTTCCGTTTCAAGTGCTGTTCCCCGTTTTGCTGCTTATCATT   1065

BSNT_00662___   1066 GCTGTTTGGAAAAAGAAACGAAGAGAGAAGTCAAAAGGGAC---------   1106
                     ||.|||   |..||||||  |||      ||| ||||||||         
RBAM_003890__   1066 GCCGTT---ATTAAGAAA--AAG------GTC-AAAGGGACCGTCTATAC   1103

BSNT_00662___   1107 --------AGGAATAAAGGAATGA   1122
                             ||.|||||        
RBAM_003890__   1104 AGTTTCGAAGAAATAA--------   1119


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