Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00664 and RBAM_003970

See Amino acid alignment / Visit BSNT_00664 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:24
# Commandline: needle
#    -asequence dna-align/BSNT_00664___yclH.1.9828.seq
#    -bsequence dna-align/RBAM_003970___yclH.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00664___yclH-RBAM_003970___yclH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00664___yclH-RBAM_003970___yclH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00664___yclH
# 2: RBAM_003970___yclH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 691
# Identity:     538/691 (77.9%)
# Similarity:   538/691 (77.9%)
# Gaps:          17/691 ( 2.5%)
# Score: 2071.5
# 
#
#=======================================

BSNT_00664___      1 ATGAGCTTATTAGAATTTCAACAAGTCGGATACTGGTATAAAGACAAAAG     50
                     ||||||.|||||...||||||||...|||.||||||||..||||||||..
RBAM_003970__      1 ATGAGCCTATTAACCTTTCAACAGACCGGCTACTGGTACCAAGACAAATC     50

BSNT_00664___     51 CCAGCCATTGTTTCAGGATATTAAC-ATCAGCTTTCAAAAAGGCAAATTC     99
                     .|||||..|.|||||||||| |||| |||||||||.|||||||.||.||.
RBAM_003970__     51 ACAGCCGCTATTTCAGGATA-TAACGATCAGCTTTGAAAAAGGGAAGTTT     99

BSNT_00664___    100 TACACAATCGTCGGCACATCAGGGACGGGGAAAACCACTTTCCTGTCTCT    149
                     ||.|||||.||||||.|.||.||.|||||.|||||.||.||.||||||||
RBAM_003970__    100 TATACAATTGTCGGCGCCTCCGGAACGGGAAAAACAACGTTTCTGTCTCT    149

BSNT_00664___    150 GGCAAGCGGACTTGACGCACCAAAAGAAGGAAACATCCTTTACGACGGAA    199
                     |||..||||.||||||.||||.|||||.||||.|||||||||..|||||.
RBAM_003970__    150 GGCGGGCGGCCTTGACACACCTAAAGAGGGAAGCATCCTTTATAACGGAG    199

BSNT_00664___    200 AAGCGGTGTCTAAAATCGGCTTAACCAATTTCAGAAATCAATATGTATCA    249
                     |||...|.||.||||||||.||||||||.|||||||||||||||||.||.
RBAM_003970__    200 AAGACATCTCCAAAATCGGATTAACCAAATTCAGAAATCAATATGTCTCT    249

BSNT_00664___    250 ATCGTCTTTCAGGCGTACAATCTGCTCCCGTATATGACGGCTTTGCAGAA    299
                     |||||||||||..|.||..|||||.||||||||||||||||..|.|||||
RBAM_003970__    250 ATCGTCTTTCAATCTTATCATCTGATCCCGTATATGACGGCGCTCCAGAA    299

BSNT_00664___    300 CGTCACAACCGCTATGGAAATCACGGGTTCTAAAGAAAAGAACAAAGAAT    349
                     .||||||||.||.|||||.|||||.||.|||||.||.||.||||||||..
RBAM_003970__    300 TGTCACAACGGCGATGGAGATCACCGGCTCTAAGGAGAACAACAAAGATG    349

BSNT_00664___    350 CATATGCGCTTGACATGCTGCAAAAGGTTGGCATCAACGAAAAACAAGCC    399
                     |.|..|||||...|||||||.||||.||.|||||||.||||.|.||.|||
RBAM_003970__    350 CGTTCGCGCTCAGCATGCTGAAAAAAGTCGGCATCACCGAACAGCAGGCC    399

BSNT_00664___    400 CGGCAAAAAGTGCTCACACTGAGCGGCGGACAGCAGCAGCGGGTATCAAT    449
                     ||.||....|||||.|||.|.||||||||||||||||||||.||.|||||
RBAM_003970__    400 CGTCAGCGGGTGCTGACATTAAGCGGCGGACAGCAGCAGCGCGTTTCAAT    449

BSNT_00664___    450 TACAAGGGCTTTCTGCTGTGACACGGATCTTATCGTAGCCGATGAACCGA    499
                     |.|..|||||||||||||||||||||||.|.||....||.||.||.||||
RBAM_003970__    450 TGCGCGGGCTTTCTGCTGTGACACGGATTTGATTTGCGCGGACGAGCCGA    499

BSNT_00664___    500 CCGGAAACCTTGATGAGGACACATCAAAAGAAATTGTACGCCTCTTTCAA    549
                     |.|||||.||.||.|||||.||.|||||.|||||.||.||.||||||||.
RBAM_003970__    500 CGGGAAATCTCGACGAGGATACGTCAAAGGAAATCGTCCGGCTCTTTCAG    549

BSNT_00664___    550 GATCTGGCGCACAA----GGAAAATAAATGCGTCATTATGGTGACGCACG    595
                     |||||||||||.||    ||    .||||||.||||.|||||||||||||
RBAM_003970__    550 GATCTGGCGCATAAAGGCGG----CAAATGCATCATCATGGTGACGCACG    595

BSNT_00664___    596 ATGAACAAATTGCAAAAGTGTCAGACATCAATATCAGACTT-TCAAGAGG    644
                     |.|||||||||||.|||||.||.||.|||||||||.| ||| ||||||||
RBAM_003970__    596 ACGAACAAATTGCCAAAGTTTCTGATATCAATATCCG-CTTATCAAGAGG    644

BSNT_00664___    645 AAGCTTTACTGTGAAGGAAAACGTCGCAGTGGTAT----AA    681
                     |||.||.||.||.||.|||||||.|.|.|..||.|    | 
RBAM_003970__    645 AAGTTTCACAGTAAAAGAAAACGGCACGGCCGTTTCCTGA-    684


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