Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00665 and RBAM_003980

See Amino acid alignment / Visit BSNT_00665 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:25
# Commandline: needle
#    -asequence dna-align/BSNT_00665___yclI.1.9828.seq
#    -bsequence dna-align/RBAM_003980___yclI.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00665___yclI-RBAM_003980___yclI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00665___yclI-RBAM_003980___yclI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00665___yclI
# 2: RBAM_003980___yclI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1513
# Identity:    1072/1513 (70.9%)
# Similarity:  1072/1513 (70.9%)
# Gaps:         128/1513 ( 8.5%)
# Score: 3683.0
# 
#
#=======================================

BSNT_00665___      1 ATGAACTTTATCAAACGGGCCTTTTGGAATATGAAGGCTAAAAAGGGAAA     50
                     |||||||||||.|||.|.||||||||||..||||||||.|||||||||||
RBAM_003980__      1 ATGAACTTTATAAAAAGAGCCTTTTGGAGCATGAAGGCAAAAAAGGGAAA     50

BSNT_00665___     51 AACGTTATTGCAATTATTTGTGTTTACAGTCATATGTGTCTTTGTTCTAT    100
                     |||.||.|||||..|..||||||||.||||.||.||..|.|||||.||.|
RBAM_003980__     51 AACATTTTTGCAGCTGGTTGTGTTTTCAGTGATTTGCATTTTTGTCCTGT    100

BSNT_00665___    101 CAGGCCTCACCATCCAGTCGGCAGCACAAAAGTCAAGCGAACTGGCCAGA    150
                     |.||.||.||.||||||||.||||||.|.||.||||||||||||||.||.
RBAM_003980__    101 CCGGTCTTACGATCCAGTCAGCAGCAAAGAAATCAAGCGAACTGGCAAGG    150

BSNT_00665___    151 CAGGAACTCGGCGGAAGCGTGACACTTCAGGTTGACCGCCAAAAGCAAAT    200
                     |||.|.||||||||.|||||.|||||.||||.||||||||||||||||||
RBAM_003980__    151 CAGCAGCTCGGCGGGAGCGTCACACTCCAGGCTGACCGCCAAAAGCAAAT    200

BSNT_00665___    201 GGAAAAACAGCAGGACAG-CGGTGAAAA----ACGCAGCTTCAAATCAAC    245
                     ||...|.||||| .|.|| |||||||||    |||    ||..|||||||
RBAM_003980__    201 GGCGCAGCAGCA-AAAAGACGGTGAAAAGAGGACG----TTTGAATCAAC    245

BSNT_00665___    246 ACCGATCAAAGTGTCTGATGCGAATAAGCTTGCAGCGCTTGAC--CATGT    293
                     .|||||....||.||.|||||.||.||||||.||  .|||.||  |||||
RBAM_003980__    246 GCCGATTTCCGTCTCAGATGCCAAGAAGCTTACA--TCTTTACAGCATGT    293

BSNT_00665___    294 GAAGAGCTACAATTACACCACATCAGCTTCAGCCAACGCGGGAAACTTTG    343
                     .||.|..|||||.|.|..|||..||||.|||||.||.||.|.||.|||||
RBAM_003980__    294 TAAAAATTACAACTTCCTCACGACAGCGTCAGCAAATGCAGAAAGCTTTG    343

BSNT_00665___    344 ATGCGATTGAAAGCTCTAGTTCAAGTGATTCCAGCTCC---AGCAGTTCA    390
                     |||||||..|||||      |||.|.||.| |||  ||   |.||||||.
RBAM_003980__    344 ATGCGATAAAAAGC------TCAGGCGAAT-CAG--CCGATAACAGTTCC    384

BSNT_00665___    391 AGCTCAAACGCTAAAAACAGC------CAAGGCGGCGGACAAGGCGGACC    434
                     .||            .||.||      ||||||||||||      .|||.
RBAM_003980__    385 GGC------------GACGGCCGTTTTCAAGGCGGCGGA------AGACA    416

BSNT_00665___    435 GCAAATGGTTCAAGCCGATCTTTCGATTGAAGGTGTCATCAGCACAGCGT    484
                     |..|||  ||| |||.|||.|||||||.|||||.||..||...||.||.|
RBAM_003980__    417 GATAAT--TTC-AGCGGATATTTCGATCGAAGGCGTGCTCTCTACGGCAT    463

BSNT_00665___    485 TAGTCGATGATTTCTCTGACGGAGA-TTCAAAAATCACAGACGGACGCGC    533
                     |..|.|||||||||.|.|.||| || .|||||||||||.|||||||||||
RBAM_003980__    464 TGCTTGATGATTTCACAGGCGG-GAGCTCAAAAATCACTGACGGACGCGC    512

BSNT_00665___    534 GATTACAAAATCAGATGTCGG-CAAAAAAGTAACAGTGATCAACGAAACT    582
                     .||.|||||..|||||| ||| |..||||||..|.|||||.||.|||||.
RBAM_003980__    513 CATCACAAAGACAGATG-CGGACGCAAAAGTCGCCGTGATTAATGAAACG    561

BSNT_00665___    583 TTAGCGGAAGAAAATGATTTGAGCGTTGGCGATTCGATCACAATTGAATC    632
                     .|.||.||..||||..|..|||..||.||||..||.||.||..||   ||
RBAM_003980__    562 CTGGCAGATCAAAACAAGCTGAAGGTCGGCGGCTCCATTACCGTT---TC    608

BSNT_00665___    633 AGCAACAGATGAAGAT------ACGACGGTAAAGCTGAAGATCGTCGGTA    676
                     ..||||||..||.|||      |..|||   |||||.||.||.||.||.|
RBAM_003980__    609 CTCAACAGCGGATGATTCTGTGAAAACG---AAGCTTAAAATTGTGGGAA    655

BSNT_00665___    677 TTTATAAAACAACATCTTCAGGCGATGACCAAGCCCAAAATTTCTCTTTC    726
                     |.||||||||||||||.|||||.||.||.||.||.||..||||.||.|||
RBAM_003980__    656 TCTATAAAACAACATCCTCAGGAGACGATCAGGCACAGCATTTTTCATTC    705

BSNT_00665___    727 TTAAACCCTTATAACAAGCTTTATACGCCTTACACAGCAACAGCGGCGCT    776
                     |||||.|||.|.||.||..|.||||||||||||||.||..|.||||||.|
RBAM_003980__    706 TTAAATCCTGACAATAAAATCTATACGCCTTACACCGCCGCGGCGGCGTT    755

BSNT_00665___    777 GAAAGGCGAC-GACTATAAAAATACGATTGACTCAGCTGTTTACTATATG    825
                     .||||| |.| ||.||.|||||.|..||...||||||.|||||.||||||
RBAM_003980__    756 AAAAGG-GTCTGATTACAAAAACAAAATCAGCTCAGCCGTTTATTATATG    804

BSNT_00665___    826 GACGACGCGAAAAATATGGATGCTTTCGTAAAAGCAGCGAAGAAAACATC    875
                     ||.||.||.|||.||||.||..|.|||||....||.|||||.||||||||
RBAM_003980__    805 GATGATGCCAAATATATTGACTCATTCGTTGCGGCTGCGAAAAAAACATC    854

BSNT_00665___    876 AATAGACTTCGATA----CGTACACACTGAATACAAACGATCAGCTTTAC    921
                     .|||||   .||||    | ||..|..|||..|||||.||||||.|.||.
RBAM_003980__    855 TATAGA---TGATAAAATC-TATGCGATGACGACAAATGATCAGGTGTAT    900

BSNT_00665___    922 CAGCAAATGGTCGGACCGATTGAAAATGTGGCTTCTTTCTCTAAAAACGT    971
                     ||||||||||||||.||||||||||||||.||.||.||.|||||||||||
RBAM_003980__    901 CAGCAAATGGTCGGCCCGATTGAAAATGTCGCGTCATTTTCTAAAAACGT    950

BSNT_00665___    972 GGTGTATCTTGTATCAGTGGCAGGCGCCGTCATTCTTGGCCTGATTGTCA   1021
                     .||||||||||||||..|.||.|||||.||||||||.||..||||.||.|
RBAM_003980__    951 AGTGTATCTTGTATCCATCGCGGGCGCGGTCATTCTCGGGTTGATCGTGA   1000

BSNT_00665___   1022 TGATGTCAATCAGGGAGCGCAAATACGAAATGGGCGTGTTAATGGCCATC   1071
                     |||||||.||||||||.|||||.||.||||||||.||.||.|||||.|||
RBAM_003980__   1001 TGATGTCGATCAGGGAACGCAAGTATGAAATGGGTGTCTTGATGGCGATC   1050

BSNT_00665___   1072 GGTGAAAAACGATGGAAATTGATTGGACAGTTCTTGACTGAGATTCTGAT   1121
                     ||.|||||.||.|||||..|.||.|||||.|||||.||.||.||||||.|
RBAM_003980__   1051 GGCGAAAAGCGCTGGAAGCTCATCGGACAATTCTTAACGGAAATTCTGGT   1100

BSNT_00665___   1122 TGTGGCCGTTATCGCTATCGGCCTTGCATCTGTGACGGGAAATCTCGTCG   1171
                     |||.||||||||.||.|||||..|.|||||.||.|||||.|..||.||.|
RBAM_003980__   1101 TGTCGCCGTTATTGCCATCGGGATCGCATCCGTCACGGGCAGCCTTGTGG   1150

BSNT_00665___   1172 CAAATCAGCTTGGAAATCAGCTTTTATCCCAGCAAATCAGTTCATCAACC   1221
                     |.||||||||.||||||||||||.|.||||||||..||||.|||.|....
RBAM_003980__   1151 CGAATCAGCTCGGAAATCAGCTTCTTTCCCAGCAGGTCAGCTCAGCCGAT   1200

BSNT_00665___   1222 GATTCAAC----GCAAACCGCAAGC------------GGACAAATGCCCG   1255
                     ||||| ||    |||||   |||||            |||.|||||||  
RBAM_003980__   1201 GATTC-ACAGCAGCAAA---CAAGCGGCTGGGGCGGAGGAGAAATGCC--   1244

BSNT_00665___   1256 GCGGCGGTGGCGGCATGGGCGGCAAAATGTTCGGCCA-CAGTTCATCAAA   1304
                     |||| ||.||||||            ||||||||.|| || ||||||...
RBAM_003980__   1245 GCGG-GGAGGCGGC------------ATGTTCGGTCAGCA-TTCATCCGG   1280

BSNT_00665___   1305 CGTGGACGTTATCGATTCACTG------AACGTCGCGGTTTCTATGAACG   1348
                     ||.|||..|.|||..|.||.||      ||||||      ||..||||.|
RBAM_003980__   1281 CGCGGATATCATCAGTACAATGCAGGTAAACGTC------TCGCTGAATG   1324

BSNT_00665___   1349 ACATGCTTATTCTGGGCGGGATCGGCATCCTAATCGCAATCATTGCAACA   1398
                     ||.|.||.|||||.|||||.||||||.||..|||.||..||||.||.|||
RBAM_003980__   1325 ACCTTCTGATTCTTGGCGGCATCGGCGTCGCAATTGCCGTCATCGCCACA   1374

BSNT_00665___   1399 TTGCTGCCGTCAATTTCAGTACTGCGGCTTCATCCGAAAACGATATTGAC   1448
                     ||.||||||||..|.|||||..||||||||||.||.||||||||..||.|
RBAM_003980__   1375 TTACTGCCGTCTGTATCAGTCATGCGGCTTCACCCTAAAACGATCCTGGC   1424

BSNT_00665___   1449 AAAACAGGAATAG   1461
                     .||.||||||||.
RBAM_003980__   1425 CAAGCAGGAATAA   1437


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