Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00666 and RBAM_003990

See Amino acid alignment / Visit BSNT_00666 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:25
# Commandline: needle
#    -asequence dna-align/BSNT_00666.1.9828.seq
#    -bsequence dna-align/RBAM_003990___yclJ.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00666-RBAM_003990___yclJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00666-RBAM_003990___yclJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00666
# 2: RBAM_003990___yclJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 880
# Identity:     562/880 (63.9%)
# Similarity:   562/880 (63.9%)
# Gaps:         206/880 (23.4%)
# Score: 2323.5
# 
#
#=======================================

BSNT_00666         1 ATGGATAAGACCGCCTCTGGGGCGCGTCCCCTTGCTGATAAATTAATTGT     50
                                                                       
RBAM_003990__      0 --------------------------------------------------      0

BSNT_00666        51 AGTCCAAAGGTATGAAAAAAATATGAATAATCTATTTCTAGTTGATGAAA    100
                                                                       
RBAM_003990__      0 --------------------------------------------------      0

BSNT_00666       101 TAAAAACTAACAATTGTGAAACGCAAAACCTTCTGTTTAAAATGGTGCTA    150
                                                                       
RBAM_003990__      0 --------------------------------------------------      0

BSNT_00666       151 TTATATAAAAAAGCATCAAAACAACCGGAGGATATAATGAAAATATTAAT    200
                                                         |||||.||||||||
RBAM_003990__      1 ------------------------------------ATGAAGATATTAAT     14

BSNT_00666       201 GATAGAAGATAATGTTAGTGTATGTACGATGACGGAGATGTTCTTTTTTA    250
                     |||||||||||||.|.||.|||||.||.||||||||.|||||||||||||
RBAM_003990__     15 GATAGAAGATAATATAAGCGTATGCACCATGACGGAAATGTTCTTTTTTA     64

BSNT_00666       251 AAGAAGGTTTTGAAGCGGAATTCGTTCATGACGGGTTAGAAGGGTACCAG    300
                     |||||||.||||||||.|||||.||.||||||||..|.|||||.||.|||
RBAM_003990__     65 AAGAAGGATTTGAAGCCGAATTTGTCCATGACGGAGTGGAAGGCTATCAG    114

BSNT_00666       301 CGTTTTACGGAAGAAAATTGGGATCTGATCATTTTGGATATCATGCTTCC    350
                     |||||.||||||||..|.||||||.||.|||||.||||.||.||||||||
RBAM_003990__    115 CGTTTCACGGAAGAGGACTGGGATTTGGTCATTCTGGACATTATGCTTCC    164

BSNT_00666       351 ATCTATGGACGGCGTGACCATCTGCAGAAAAATAAGAGAGACAAGCACGG    400
                     |||.||||||||.|||||.||||||.|.||||||||||||||.||||..|
RBAM_003990__    165 ATCAATGGACGGAGTGACGATCTGCCGGAAAATAAGAGAGACGAGCAGTG    214

BSNT_00666       401 TGCCGATTATCATGCTGACTGCCAAAGACACTGAATCAGATCAGGTCATC    450
                     ||||||||||.||||||||.||.||.||.||.||.||.||||||||.|||
RBAM_003990__    215 TGCCGATTATTATGCTGACCGCAAAGGATACGGAGTCTGATCAGGTGATC    264

BSNT_00666       451 GGCTTTGAGATGGGGGCGGACGATTATGTCACAAAGCCGTTCAGTCCGCT    500
                     ||.|||||.||||||||||||||.||||||||.|||||||||||.|||||
RBAM_003990__    265 GGGTTTGAAATGGGGGCGGACGACTATGTCACCAAGCCGTTCAGCCCGCT    314

BSNT_00666       501 GACATTGGTTGCCCGCATCAAAGCCGTCATCAGAAGATACAAGGCGA---    547
                     |||..|.||.||.||.||.|||||.||.||||||||||||..|||||   
RBAM_003990__    315 GACGCTAGTAGCGCGGATTAAAGCGGTGATCAGAAGATACCGGGCGACGG    364

BSNT_00666       548 --CAGGC-----AAAGCGGTTATTGATGAAGATATGATCGAAACGGAATG    590
                       |||||     |||||          ||.||..||||||||||||..||
RBAM_003990__    365 GGCAGGCCGTAAAAAGC----------GACGACTTGATCGAAACGGCGTG    404

BSNT_00666       591 CTTTACCATCAATAAGAAGACGAGAGAAGTATTATTAAACGGAGAGCCTG    640
                     .|||.|.|||||||||||||||.|.|||||.||..|..|||||.|.||||
RBAM_003990__    405 TTTTTCAATCAATAAGAAGACGCGGGAAGTGTTTCTGCACGGAAAACCTG    454

BSNT_00666       641 TAGAAAATCTCACGCCGAAGGAATTCGATCTGCTTTATTACCTTGTCCAA    690
                     |.||.|||||.|||||||||||||||||||||||.|.|||.||.|..|||
RBAM_003990__    455 TCGAGAATCTGACGCCGAAGGAATTCGATCTGCTCTTTTATCTCGCACAA    504

BSNT_00666       691 AATCCGCGGCAGGTGTTCTCCAGAGAACAGCTGCTTGAGCAGGTATGGGG    740
                     ||.|||||.|||||.||.||.|||||.|||||||||||||||||||||||
RBAM_003990__    505 AACCCGCGCCAGGTTTTTTCGAGAGAGCAGCTGCTTGAGCAGGTATGGGG    554

BSNT_00666       741 CTATCAATTTTACGGAGATGAGCGAACGGTTGACGTTCATATCAAACGGC    790
                     |||||||||||||||.|||||.||.||||||||.||||||||.|||||||
RBAM_003990__    555 CTATCAATTTTACGGCGATGAACGTACGGTTGATGTTCATATTAAACGGC    604

BSNT_00666       791 TGCGGAAAAAGCTTGCCAGCGAGGACAAGCCTTTCCTGTATACTGTGTGG    840
                     ||||.|||||.||..||||.|||||.||.||.||..|.||.||.||||||
RBAM_003990__    605 TGCGCAAAAAACTGTCCAGTGAGGAAAAACCGTTTTTATACACGGTGTGG    654

BSNT_00666       841 GGAGTAGGGTATAAATTTGATGAAGATTAA    870
                     ||.|||||.||.|||||||||||.||||||
RBAM_003990__    655 GGGGTAGGATACAAATTTGATGAGGATTAA    684


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