Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00667 and RBAM_004000

See Amino acid alignment / Visit BSNT_00667 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:25
# Commandline: needle
#    -asequence dna-align/BSNT_00667___yclK.1.9828.seq
#    -bsequence dna-align/RBAM_004000___yclK.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00667___yclK-RBAM_004000___yclK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00667___yclK-RBAM_004000___yclK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00667___yclK
# 2: RBAM_004000___yclK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1461
# Identity:    1092/1461 (74.7%)
# Similarity:  1092/1461 (74.7%)
# Gaps:          72/1461 ( 4.9%)
# Score: 3992.0
# 
#
#=======================================

BSNT_00667___      1 ATGAAGATTAAATATTTATATCAGCTGCTGCTTAGCCATATCAGCATTTT     50
                     ||||.|||||||||.|||||||||||||||.|.||.|||.||||||||||
RBAM_004000__      1 ATGAGGATTAAATACTTATATCAGCTGCTGTTAAGTCATGTCAGCATTTT     50

BSNT_00667___     51 GATTTTAGCGTTTGTCATTATCATTTCTCTGTTTTCCCACTTTGTGAAAG    100
                     ||||||.||.|||.||||.||||||||.||||||||.|||||||||||||
RBAM_004000__     51 GATTTTGGCCTTTTTCATCATCATTTCCCTGTTTTCGCACTTTGTGAAAG    100

BSNT_00667___    101 AATTTGCCTATCAAAACAAAGTAGAGGAATTGACGTCATATGCGGTGCAG    150
                     |.|||||.||||||||.|||||.||.||..||.|.||.||.|||..||||
RBAM_004000__    101 ATTTTGCGTATCAAAATAAAGTGGATGAGCTGTCTTCTTACGCGCAGCAG    150

BSNT_00667___    151 ATCGCAAATGAATTCCAAGC----CGGCC---AGGTGGACATGCGCAGGC    193
                     |||.|||.||       |||    |||||   |..|.||..|||||.|.|
RBAM_004000__    151 ATCACAAGTG-------AGCTGAACGGCCGCGATCTTGATCTGCGCCGCC    193

BSNT_00667___    194 TTTATCCTTATCAGGACATGTTAAGCACAAGAAAGACGCA-GTTTATCAT    242
                     |.|||||.||||||||||||||||..||..|..|||| || ||||||.||
RBAM_004000__    194 TGTATCCGTATCAGGACATGTTAAAAACGCGCGAGAC-CAGGTTTATTAT    242

BSNT_00667___    243 CTTTAATGAAGAGCAGCAGCCTTATTTTCTTCCTGAAGGCTTTCATCACC    292
                     .||..|||||.|.||||.||||||.|||.|||||||.|      ||...|
RBAM_004000__    243 TTTCGATGAACATCAGCGGCCTTACTTTTTTCCTGACG------ATATGC    286

BSNT_00667___    293 CACCAAGGGAACAGCTG--AAGAAATCAGAATGGAATAAGCTAAAAAAAG    340
                     |.||..|.||..|||||  |||.||  |||.|||.|.|.|||.||..|||
RBAM_004000__    287 CGCCGCGCGAGAAGCTGAAAAGTAA--AGAGTGGCACATGCTGAAGCAAG    334

BSNT_00667___    341 GGCAGACTG-TCATGATCAGGGC--AGATG-GCCGTTTTGAT---GA---    380
                     ||.|.||.| ||| ||||||.||  ||||| .|||||||.||   ||   
RBAM_004000__    335 GGAAAACCGTTCA-GATCAGAGCGGAGATGAACCGTTTTAATACGGAAGG    383

BSNT_00667___    381 ---TGAAGTGTCACTTGTGGCGCAGCCTATATTTGTTCAGAACG---AAT    424
                        .|||||.||.|||||.||..|.||..|.|||.|   .||||   |||
RBAM_004000__    384 CTTGGAAGTATCGCTTGTCGCAAAACCGCTTTTTAT---CAACGATCAAT    430

BSNT_00667___    425 TTAAAGGCGCCGTTCTGCTGATTTCTCCGATCAGCGGTGTTGAACAGATG    474
                     ||||||||||.||.|||||..|.|||||..||||.||.||.||.||||||
RBAM_004000__    431 TTAAAGGCGCGGTGCTGCTCGTGTCTCCCGTCAGAGGGGTCGAGCAGATG    480

BSNT_00667___    475 GTCAATCAGGTCAACCTCTATATGTTTTACGCTGTGATCAGCACGCTTGT    524
                     .|||..||||||||||.|||||||.|||||||..|.||||||||.|||.|
RBAM_004000__    481 ATCAGCCAGGTCAACCGCTATATGATTTACGCGATCATCAGCACCCTTAT    530

BSNT_00667___    525 GATTACGATTCTCGTGAGCTGGCTTCTGTCCAAATTCCATGTCAAGCGGA    574
                     .||.||||||||..|||||||||||.|.||.|||||.||.||||||||||
RBAM_004000__    531 CATCACGATTCTGCTGAGCTGGCTTTTATCTAAATTTCACGTCAAGCGGA    580

BSNT_00667___    575 TTCAAAAGCTGAGAGAAGCGACAGATAAAGTGGCTTCCGGCGATTATGAC    624
                     ||||.|...||.|.||.|||||.|..||||||||.|||||.|||||.|| 
RBAM_004000__    581 TTCAGACATTGCGGGATGCGACCGGAAAAGTGGCATCCGGTGATTACGA-    629

BSNT_00667___    625 ATCCATTTGG----AAAACAGCTACGGAGACGAAATCGGCGTTCTGGCGT    670
                        .||||.|    |.||||||..|||.||.|||||||||.|.|||||||
RBAM_004000__    630 ---TATTTCGCTCAAGAACAGCGGCGGCGATGAAATCGGCATGCTGGCGT    676

BSNT_00667___    671 CTGACTTTAATATCATGGCGAAAAAACTAAAGCAGTCAAGGGATGAAATC    720
                     |.||.||.||.|.||||||.|||||.||.|||||.||.||.||..|.||.
RBAM_004000__    677 CCGATTTCAACACCATGGCCAAAAATCTGAAGCAATCGAGAGAGCAGATT    726

BSNT_00667___    721 GAGCGCCTTGAGAAGCGGAGAAGGCAGTTTATTGCTGATGTGTCACATGA    770
                     ||.|||||.||.||.|||||..|.||.|||||.||.|||||.||.|||||
RBAM_004000__    727 GACCGCCTCGAAAAACGGAGGCGCCAATTTATCGCCGATGTCTCCCATGA    776

BSNT_00667___    771 ATTAAAAACACCGCTGACGACGATCAACGGTTTGGTTGAAGGGTTGAACA    820
                     ..|.|.|||.||..|||||||.||.|||||..|.||.||.|||.|.||||
RBAM_004000__    777 GCTGAGAACGCCTTTGACGACCATTAACGGACTTGTGGAGGGGCTTAACA    826

BSNT_00667___    821 GCCATACGATTCCTGAGGATAAA---AAGGATAAATGCTTCTCGCTGATC    867
                     ||.|.||.||.||   |||.|||   ||.||.||||||||||||||||||
RBAM_004000__    827 GCAACACCATCCC---GGAAAAAGATAAAGAGAAATGCTTCTCGCTGATC    873

BSNT_00667___    868 AGTGAGGAAACGAAGCGCATGCTGCGGCTCGTAAAAGAAAATCTGGATTA    917
                     ||.||.|||||||||||.|||||..|||||||.||||||||.||||||||
RBAM_004000__    874 AGCGAAGAAACGAAGCGGATGCTCAGGCTCGTGAAAGAAAACCTGGATTA    923

BSNT_00667___    918 TGAAAAAATCAGATCCCAGCAAATTACCTTGAACAAGCT-AGACGTTCCT    966
                     ||||||||||||||||||||||||.|...||.||||||| ||.| |.||.
RBAM_004000__    924 TGAAAAAATCAGATCCCAGCAAATCAAACTGGACAAGCTCAGTC-TGCCG    972

BSNT_00667___    967 CTGATCGAGGTGTTTGAAATCGTGAAAGAGCACTTGCAGCAGCAGGCGGA   1016
                     ||.|||||||||||||||||..|.||||||||..|..|.|||||||||||
RBAM_004000__    973 CTCATCGAGGTGTTTGAAATTATTAAAGAGCATCTCAATCAGCAGGCGGA   1022

BSNT_00667___   1017 AGAAAAACAAAACAAGCTGATGATACAAGTAGAGGATCACGTCATCGTAC   1066
                     .|||||||||||..|||||..|||.|||||.|||||...|||||..||..
RBAM_004000__   1023 GGAAAAACAAAATCAGCTGCGGATTCAAGTGGAGGACGGCGTCAAAGTGT   1072

BSNT_00667___   1067 ATGCCGATTATGACCGGTTCATTCAAATTCTCGTCAACATTACGAAAAAC   1116
                     ..||||||||||||.||.|.||.||.||||||||||||||.|||||||||
RBAM_004000__   1073 TCGCCGATTATGACAGGCTGATCCAGATTCTCGTCAACATCACGAAAAAC   1122

BSNT_00667___   1117 AGCATCCAATTTACGCAAAACGGTGACATTTGGCTGCGC-GGAATGGAAG   1165
                     |||||.||||||||||||||.||.|||||...||||||| ||.|| ||||
RBAM_004000__   1123 AGCATTCAATTTACGCAAAAGGGAGACATCACGCTGCGCGGGTAT-GAAG   1171

BSNT_00667___   1166 GTTATAAAGAGACGATTATTGAAATTGAAGACACGGGTATCGGCAT-TCC   1214
                     |.||||||||.|||.|.||||||||.||||||||.||.|||||||| |||
RBAM_004000__   1172 GCTATAAAGAAACGGTGATTGAAATCGAAGACACCGGGATCGGCATCTCC   1221

BSNT_00667___   1215 AAAAGAGGATATTGAGCATATTTGGGAGCGATTCTATAAAGCAGATATTT   1264
                      ||||||||.|||||.|||||.||||||||.||.|||||.||.||..|.|
RBAM_004000__   1222 -AAAGAGGAAATTGAACATATATGGGAGCGGTTTTATAAGGCGGACGTGT   1270

BSNT_00667___   1265 CAAGAACGAACACAGCATACGGTGAATACGGACTCGGTCTCTCGATCGTC   1314
                     |..|.|||||.||.||||||||.||||||||||||||.||.||.||||||
RBAM_004000__   1271 CCCGGACGAATACGGCATACGGCGAATACGGACTCGGCCTTTCCATCGTC   1320

BSNT_00667___   1315 AGGCAGCTCGTTGAAATGCACCAGGGCACAGTAGAAATCAAGAGTGAAGA   1364
                     |||||||||||.|||||||||.||||.||..||||.||..|.||.|||.|
RBAM_004000__   1321 AGGCAGCTCGTCGAAATGCACAAGGGTACGATAGATATTGACAGCGAAAA   1370

BSNT_00667___   1365 AGGGAAAGGCACAAAGTTCATCATCCGCCTTCCTTTAACGGCAAAACAGC   1414
                     |||.||||||||.|..||.|..|||||||||||..|.|...|.|||||..
RBAM_004000__   1371 AGGAAAAGGCACGACCTTTACAATCCGCCTTCCGCTGAATACGAAACATG   1420

BSNT_00667___   1415 AATAG------   1419
                     |||..      
RBAM_004000__   1421 AATCATCTTGA   1431


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