Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00675 and RBAM_004060
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:26
# Commandline: needle
# -asequence dna-align/BSNT_00675___yclO.1.9828.seq
# -bsequence dna-align/RBAM_004060___yclO.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00675___yclO-RBAM_004060___yclO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00675___yclO-RBAM_004060___yclO.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00675___yclO
# 2: RBAM_004060___yclO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 952
# Identity: 753/952 (79.1%)
# Similarity: 753/952 (79.1%)
# Gaps: 8/952 ( 0.8%)
# Score: 2940.0
#
#
#=======================================
BSNT_00675___ 1 ATGCGTAACCAGATGAAAATAGCTTTGCTCGTTGTTTTAGCCATTGTATG 50
|||.||.|..|.|..|||||..|..||||.|..|...|.|||||..||||
RBAM_004060__ 1 ATGAGTCATAATAAAAAAATTACGCTGCTGGCGGCGCTCGCCATGATATG 50
BSNT_00675___ 51 TATCGGCTTGTTTTTGTTTTA-TGACTTAGGCAATTGGGATTACACCCTG 99
||||||.||.||..||||.|| .||| |.|||||||||||.|||.|||||
RBAM_004060__ 51 TATCGGATTCTTCCTGTTCTACGGAC-TGGGCAATTGGGAATACTCCCTG 99
BSNT_00675___ 100 CCGAGACGAATCAAAAAAGTCGC-TGCCATTGTGCTGACGGGGGGAGCGA 148
|||||||||..|...||||| || ||||||..||||.||.||.|||||||
RBAM_004060__ 100 CCGAGACGATGCTTCAAAGT-GCTTGCCATGATGCTCACCGGAGGAGCGA 148
BSNT_00675___ 149 TTGCGTTTTCGACCATGATCTTTCAAACGATTACGAACAACCGCATCCTG 198
|.|||||||||||..|.|||||.||.||||||||.||.||||||||.|||
RBAM_004060__ 149 TCGCGTTTTCGACGGTCATCTTCCAGACGATTACAAATAACCGCATACTG 198
BSNT_00675___ 199 ACGCCGAGCATTTTGGGCCTTGATTCTCTCTACATGCTGATTCAGACTGG 248
||.|||.|||||||.|||||.|||||.||.||.|||||.||||||||.|.
RBAM_004060__ 199 ACACCGGGCATTTTAGGCCTCGATTCCCTGTATATGCTCATTCAGACCGT 248
BSNT_00675___ 249 CATTATCTTTTTGTTCGGTTCTGCGAATATGGTCATCATGAATAAAAACA 298
|||..|.||..||||||||||...||||||.|||||.|||||.|||||..
RBAM_004060__ 249 CATCGTGTTCCTGTTCGGTTCAATGAATATCGTCATGATGAACAAAAATC 298
BSNT_00675___ 299 TCAACTTTATCATCTCTGTTCTGCTGATGATCCTGTTTTCTCTTGTTTTG 348
|.||.||..|||||||.||...|||||||.|.||.||.||.||.||||||
RBAM_004060__ 299 TTAATTTCGTCATCTCCGTCGGGCTGATGGTGCTCTTGTCACTCGTTTTG 348
BSNT_00675___ 349 TATCAGATCATGTTCAAGGGTGAGGGGAGAAATATCTTTTTCCTTCTGCT 398
||||||.|||||||.||.||.||||||.|.||..|.||||||||||||||
RBAM_004060__ 349 TATCAGCTCATGTTTAAAGGCGAGGGGCGGAACGTGTTTTTCCTTCTGCT 398
BSNT_00675___ 399 TATCGGAATCGTGTTTGGCACGCTGTTCAGCAGCCTGTCTTCCTTTATGC 448
|.||||..|||||||.|||||||||||||.|||.|||||.||||||||||
RBAM_004060__ 399 TGTCGGCGTCGTGTTCGGCACGCTGTTCAACAGTCTGTCATCCTTTATGC 448
BSNT_00675___ 449 AGATGCTGATTGATCCGAATGAGTTCCAAGTGGTGCAGGACAAGATGTTT 498
||||||||||||||||||||||||||||.||.||.||||||||.||||||
RBAM_004060__ 449 AGATGCTGATTGATCCGAATGAGTTCCAGGTTGTTCAGGACAAAATGTTT 498
BSNT_00675___ 499 GCCAGCTTTAACAACATCAATACAGATTTGTTATGGCTCGC--GTTCATC 546
|||||.||||||||.||||||||.|||.|.|||.||.|.|| ||.| .
RBAM_004060__ 499 GCCAGTTTTAACAATATCAATACCGATCTTTTAGGGTTTGCCGGTGC--T 546
BSNT_00675___ 547 ATCTTCCTGCTGACAGGCGTTTATGTCTGGCGTTTTACAAAGTTTTTCGA 596
.||||.||.|||||.|||.|||||||||||||.||.||...||||||.||
RBAM_004060__ 547 GTCTTTCTTCTGACGGGCATTTATGTCTGGCGGTTCACGCGGTTTTTTGA 596
BSNT_00675___ 597 TGTGCTGTCGCTCGGACGCGAGCACGCCGTGAATTTGGGCATTGACTACG 646
.||||||||.|||||..|.|||||||||||.||..||||.|||||.||||
RBAM_004060__ 597 CGTGCTGTCCCTCGGCAGGGAGCACGCCGTCAACCTGGGGATTGATTACG 646
BSNT_00675___ 647 ACAAAGTGGTGAAGCAGATGCTGATCGTGGTTGCGATTTTGGTTTCTGTT 696
|.||..|.|||||.||||||||.|||||.||.||.|||.|.||.|||||.
RBAM_004060__ 647 ATAAGCTTGTGAAACAGATGCTCATCGTCGTCGCCATTCTTGTGTCTGTC 696
BSNT_00675___ 697 TCAACAGCGCTAGTCGGGCCGATTATGTTTTTAGGCCTTCTGGTCGTCAA 746
||.||.||.||.||.||||||||||||||||||||.||.||.||||||||
RBAM_004060__ 697 TCTACGGCTCTTGTGGGGCCGATTATGTTTTTAGGACTGCTTGTCGTCAA 746
BSNT_00675___ 747 CCTGGCGAGAGAATTCCTGAAAACATATAAGCATTCATACTTAATCGCAG 796
.|||.|||||||.||..|.|||||.||.|.|||..|.||.||||||||.|
RBAM_004060__ 747 TCTGTCGAGAGAGTTTTTAAAAACCTACAGGCACACGTATTTAATCGCGG 796
BSNT_00675___ 797 GCTCCGTTTTCATCAGCATCATTGCGCTGGTCGGAGGGCAGTTTGTGGTT 846
|.||.||..|.|||||||||.|.|||||.|||||.||.|||||.||.||.
RBAM_004060__ 797 GTTCTGTCCTGATCAGCATCGTCGCGCTCGTCGGGGGCCAGTTCGTCGTG 846
BSNT_00675___ 847 GAGAAAGTGTTTACCTTCTCAACGACGCTGAGCGTCATTATTAATTTTGC 896
|||||||||||.||.||.||.|||||||||||||||||.|||||||||||
RBAM_004060__ 847 GAGAAAGTGTTCACGTTTTCCACGACGCTGAGCGTCATCATTAATTTTGC 896
BSNT_00675___ 897 CGGCGGGATTTATTTTATCTACTTGCTGTTAAAGGAGAATAAATCATGGT 946
|||||||||||||||||||||..|||||||||||||||||||||||||||
RBAM_004060__ 897 CGGCGGGATTTATTTTATCTATCTGCTGTTAAAGGAGAATAAATCATGGT 946
BSNT_00675___ 947 AG 948
||
RBAM_004060__ 947 AG 948
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