Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00679 and RBAM_004090

See Amino acid alignment / Visit BSNT_00679 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:26
# Commandline: needle
#    -asequence dna-align/BSNT_00679___ycnB.1.9828.seq
#    -bsequence dna-align/RBAM_004090___ycnB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00679___ycnB-RBAM_004090___ycnB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00679___ycnB-RBAM_004090___ycnB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00679___ycnB
# 2: RBAM_004090___ycnB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1449
# Identity:    1109/1449 (76.5%)
# Similarity:  1109/1449 (76.5%)
# Gaps:          54/1449 ( 3.7%)
# Score: 4222.0
# 
#
#=======================================

BSNT_00679___      1 TTGAACACAAGTATTGAACAAAA----ACCTTTTAACCGTTCTGTCATTG     46
                     |||||.|..|||||||    |||    |||.|..|||||.||||||||||
RBAM_004090__      1 TTGAATAAGAGTATTG----AAACTGCACCATACAACCGCTCTGTCATTG     46

BSNT_00679___     47 TCGGCATTTTGTTAGCCGGAGCGTTTGTGGCGATTTTGAACCAGACATTG     96
                     ||||.|||.|.||.||.||||||||.||.||.|||||||||||||||.||
RBAM_004090__     47 TCGGGATTCTTTTGGCGGGAGCGTTCGTCGCCATTTTGAACCAGACACTG     96

BSNT_00679___     97 TTGATTACCGCACTTCCCCATATCATGAGGGATTTCAATGTCGATGCCAA    146
                     .|.||.||.||.||.||.||.||.||||..||.||||||.|.||.|||||
RBAM_004090__     97 CTTATCACGGCGCTGCCGCACATTATGAATGACTTCAATATAGACGCCAA    146

BSNT_00679___    147 CCAAGCACAATGGCTGACCACATCATTTATGTTAACCAATGGGATTTTAA    196
                     |.||||||||||||||||.|||||.||||||.|.||.||.||||||||.|
RBAM_004090__    147 CAAAGCACAATGGCTGACAACATCGTTTATGCTGACGAACGGGATTTTGA    196

BSNT_00679___    197 TTCCGATTACCGCGTTTTTAATTGAGAAATTCACAAGCCGGGCGCTGCTC    246
                     |||||||||||||.||||||||.|||||||||||.|||||..|.||..|.
RBAM_004090__    197 TTCCGATTACCGCATTTTTAATAGAGAAATTCACGAGCCGCACCCTCTTG    246

BSNT_00679___    247 ATCACAGCAATGAGCATTTTCACTGCCGGAACAGTCGTCGGAGCGTTCGC    296
                     ||..|.||.|||||.||||||||.||.||.||..|.|||||.||.|||||
RBAM_004090__    247 ATTTCCGCCATGAGTATTTTCACGGCGGGCACCATTGTCGGCGCATTCGC    296

BSNT_00679___    297 GCCGAACTTCCCGGTTCTGCTGACAGCGCGTATCATTCAAGCGGCTGGAG    346
                     .|||||.||.|||||..||.|.||.||.||.||.||.||.||.||.||.|
RBAM_004090__    297 CCCGAATTTTCCGGTATTGTTAACGGCCCGGATTATCCAGGCAGCCGGCG    346

BSNT_00679___    347 CCGGCATTATGATGCCGCTCATGCAGACTGTATTCCTGACAATCTTTCCG    396
                     ||||.||||||.||||.|||||||||||.|||||.||.||.||.||.|||
RBAM_004090__    347 CCGGAATTATGCTGCCTCTCATGCAGACGGTATTTCTCACGATTTTCCCG    396

BSNT_00679___    397 ATTGAAAAGCGCGGCCAGGCTATGGGTATGGTCGGATTGGTCATCTCATT    446
                     ||.|||||||||||||..||.||||||||||||||.|||||.||.||.||
RBAM_004090__    397 ATGGAAAAGCGCGGCCGCGCCATGGGTATGGTCGGCTTGGTTATTTCGTT    446

BSNT_00679___    447 CGCGCCTGCGATCGGACCGACTCTTTCCGGATGGGCTGTCGAAGCTTTCT    496
                     ||||||.||||||||.|||||.||||||||||||||.||||||||.||||
RBAM_004090__    447 CGCGCCGGCGATCGGCCCGACGCTTTCCGGATGGGCGGTCGAAGCATTCT    496

BSNT_00679___    497 CTTGGAGATCATTGTTTTATATTATTCTACCGTTTGCTGTGATTGATTTG    546
                     |||||.|.||.||||||||||||||..|.|||.|.||.||.||.||||||
RBAM_004090__    497 CTTGGCGGTCTTTGTTTTATATTATCTTCCCGATCGCAGTCATCGATTTG    546

BSNT_00679___    547 ATTCTTGCCAGCATCCTGATGAAAAACGTGACGACTTTAAGAAAAACACA    596
                     .||.|.||.|..||.||||||||||||||.|||||.|||.||.|||||||
RBAM_004090__    547 CTTTTAGCGATTATTCTGATGAAAAACGTCACGACATTACGAGAAACACA    596

BSNT_00679___    597 GATTGATATTTTATCAGTCATCCTTTCAACATTTGGGTTCGGCGGCCTTC    646
                     |||||||||||||||.||.|||.|.||.||..|.||.|||||||||||.|
RBAM_004090__    597 GATTGATATTTTATCCGTGATCTTATCGACCCTCGGATTCGGCGGCCTGC    646

BSNT_00679___    647 TGTACGGCTTCTCAAGCGTCGGCTCTTACGGCTGGTCCAGT--TCAACCG    694
                     |.||||||||||||||||.|||.||.|..||.|||.|||||  |.||  |
RBAM_004090__    647 TTTACGGCTTCTCAAGCGCCGGTTCATCAGGGTGGACCAGTGCTGAA--G    694

BSNT_00679___    695 TCTTGATTTCACTGCTGGTGGGTGTCATCGCGCTGCTCTTGTTTATCACA    744
                     |..|||.|||.|||||.||.||.|...||||||||.|.||.||||||.||
RBAM_004090__    695 TGCTGACTTCGCTGCTTGTCGGAGCGGTCGCGCTGATTTTCTTTATCGCA    744

BSNT_00679___    745 AGACAAATGAAGCTTGAAAAACCGATGCTGGAATTCCGCGTCTTCACGTT    794
                     |||||.||||||||..|||||||||||||||||||||||||.||..|.||
RBAM_004090__    745 AGACAGATGAAGCTCAAAAAACCGATGCTGGAATTCCGCGTGTTTTCTTT    794

BSNT_00679___    795 TGGCGTTTTCAGCTTAACAACACTGCTGGGAACCCTCGTCTTTGCATTAT    844
                     .||..||||||||.|.||.||.|||||.|||||.||.||.||.||..|..
RBAM_004090__    795 CGGGATTTTCAGCCTGACCACCCTGCTCGGAACGCTTGTTTTCGCGCTGC    844

BSNT_00679___    845 TGATCGGTACGGAAACCATCCTGCCGCTTTATACACAAAATGTCAGAGAC    894
                     |||||||.|||||||||||.||.||||||||.||.|||||.|||.|.|.|
RBAM_004090__    845 TGATCGGAACGGAAACCATTCTCCCGCTTTACACGCAAAAAGTCCGGGGC    894

BSNT_00679___    895 GTCACAGCTTTTGATACAGGGCTTATGCTCCTTCCGGGAGCCGTTGTGAT    944
                     ||..|.||.||||||||.||..|.|||||..|.|||||.||..|||||||
RBAM_004090__    895 GTATCCGCGTTTGATACCGGATTAATGCTTTTGCCGGGCGCGATTGTGAT    944

BSNT_00679___    945 GGGCTTTATGTCGCCGATTATCGGCAGAATTTTTGACCGTGTCGGCGGAA    994
                     |||..|.|||||.|||.||||||||.|..|.||||||....|||||||||
RBAM_004090__    945 GGGGATGATGTCTCCGTTTATCGGCCGGGTGTTTGACAAAATCGGCGGAA    994

BSNT_00679___    995 GAGGG-CTGGCGATTGCCGGTTTCTGCATCATCTTCCTGACATCTCTGCC   1043
                      |||| ||.|||||..||||.||||.|||||||.|.||.||.||.|||||
RBAM_004090__    995 -AGGGCCTTGCGATGACCGGATTCTTCATCATCCTGCTCACGTCCCTGCC   1043

BSNT_00679___   1044 GTTTATGCAGCTGACTGACCATACGTCACTCGCTTGGATTGTCGT--TTT   1091
                     |||||||.|.|||||.|||...|||||.|||..||||||||||||  |||
RBAM_004090__   1044 GTTTATGAATCTGACGGACTCGACGTCTCTCATTTGGATTGTCGTCGTTT   1093

BSNT_00679___   1092 ATACACCGTTCGTCTCTTAGGCACCGCCATGATCATGATGCCGGTGACAA   1141
                     ||  ||||..||.||.||.||.||.||||||||.||||||||||||||.|
RBAM_004090__   1094 AT--ACCGCGCGGCTTTTGGGAACAGCCATGATTATGATGCCGGTGACGA   1141

BSNT_00679___   1142 CAGCCGGAATCAACGCGCTGCCGCGCCACTTGATTCCGCACGGAACTGCG   1191
                     ||||.||.||||||||.||||||||||||||.|||||||||||.||.||.
RBAM_004090__   1142 CAGCGGGTATCAACGCCCTGCCGCGCCACTTAATTCCGCACGGCACAGCC   1191

BSNT_00679___   1192 ATGAACAACACGATTCGCCAAGTCGGCGGCTCGATCGGAACCGCACTATT   1241
                     ||||||||.||..|.||||||||||||||.||.|||||.||.||.||..|
RBAM_004090__   1192 ATGAACAATACCGTCCGCCAAGTCGGCGGTTCTATCGGTACGGCGCTGCT   1241

BSNT_00679___   1242 GGTTTCCGTGATGAGCAACCAGGCCGCACATGCAGGCACGACAAATGTGA   1291
                     .||||||||||||||||.|||||||||        ||||| ||||||.||
RBAM_004090__   1242 AGTTTCCGTGATGAGCAGCCAGGCCGC--------GCACG-CAAATGCGA   1282

BSNT_00679___   1292 -------AGC--ACGCTGCCCTGCACGGCATGAACGCCGCTTTTATTGTG   1332
                            .||  ||||.|||||||||||||||||.||.||.|||.|.||.
RBAM_004090__   1283 CAACTCCGGCAAACGCCGCCCTGCACGGCATGAATGCGGCATTTGTCGTA   1332

BSNT_00679___   1333 GCTGCCGTCATTGCACTTGTCGGCTTCCTTCTCTCATTCACATTAAAGAA   1382
                     ||.|||..|||.||.||.|.|||||||||.||.||.||.|.|||.|||||
RBAM_004090__   1333 GCCGCCTGCATCGCGCTGGCCGGCTTCCTCCTATCTTTTATATTGAAGAA   1382

BSNT_00679___   1383 A------CCTCAGCGCCCTGCCGAACAGCAGCCGGC----ACGC--TAA   1419
                     |      |.|||||      ||||.|||||||.|||    ||||  |||
RBAM_004090__   1383 AAAACCGCGTCAGC------CCGAGCAGCAGCAGGCCGTTACGCGGTAA   1425


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