Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00683 and RBAM_004130

See Amino acid alignment / Visit BSNT_00683 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:26
# Commandline: needle
#    -asequence dna-align/BSNT_00683___yczG.1.9828.seq
#    -bsequence dna-align/RBAM_004130___yczG.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00683___yczG-RBAM_004130___yczG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00683___yczG-RBAM_004130___yczG.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00683___yczG
# 2: RBAM_004130___yczG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 321
# Identity:     249/321 (77.6%)
# Similarity:   249/321 (77.6%)
# Gaps:          12/321 ( 3.7%)
# Score: 951.5
# 
#
#=======================================

BSNT_00683___      1 ATGAACATTCCAAACCATCCAGAAACAGAAACATTGCAGCTGACAAAGGT     50
                     ||||||||||||||||||||.|||||.|||...||.||||||||||||||
RBAM_004130__      1 ATGAACATTCCAAACCATCCTGAAACCGAACGCTTACAGCTGACAAAGGT     50

BSNT_00683___     51 TCTTCATGCACTTAGTGATCCGCTTCGTTTAGAGCTCGTCAAGCAATTAG    100
                     |||||||||.||.|||||||||||.||.||||||||.|||||.|||||.|
RBAM_004130__     51 TCTTCATGCTCTGAGTGATCCGCTCCGCTTAGAGCTGGTCAAACAATTGG    100

BSNT_00683___    101 CTGAAGCAAAAGAAAAAACGTGCAGCACCTGTGCAGATGTGCAGGTTGCC    150
                     |.|||.|||.|||||||||||||.|.|||||.||.|||||.|.|||.||.
RBAM_004130__    101 CGGAAACAACAGAAAAAACGTGCGGAACCTGCGCTGATGTCCGGGTCGCT    150

BSNT_00683___    151 AAATCGACTTTGTCGCATCATTTTAAAGTTTTGAGAGAATCGGGCATCGC    200
                     |||||.||..||||.|||||.||.|||||..||.|.|||.||||.|||||
RBAM_004130__    151 AAATCAACGCTGTCCCATCACTTCAAAGTGCTGCGGGAAGCGGGGATCGC    200

BSNT_00683___    201 TCAAGTTCGGATAGAAGGAAAGCGCCGGTATTATTCGCTTCGCGCTGAAG    250
                     .|||||.||.|||||.||.||||.|||.||||||||.||.|||...||.|
RBAM_004130__    201 CCAAGTGCGCATAGACGGGAAGCACCGTTATTATTCCCTGCGCAAAGATG    250

BSNT_00683___    251 ACCTTGAAAA--GGCATTTCCGGGCCTGCTTGAAGCCG----TGCTGAAT    294
                     |  ||.|.||  |||.|||||.||||||| ||.||.||    |||.||  
RBAM_004130__    251 A--TTTACAAGCGGCGTTTCCCGGCCTGC-TGGAGGCGATTTTGCAGA--    295

BSNT_00683___    295 GTAGACCAGGACCGCTGGTGA    315
                      .|||.|.|||||||||||.|
RBAM_004130__    296 -CAGAACCGGACCGCTGGTAA    315


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