Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00712 and RBAM_004290
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:28
# Commandline: needle
# -asequence dna-align/BSNT_00712___ycsG.1.9828.seq
# -bsequence dna-align/RBAM_004290___ycsG.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00712___ycsG-RBAM_004290___ycsG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00712___ycsG-RBAM_004290___ycsG.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00712___ycsG
# 2: RBAM_004290___ycsG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1228
# Identity: 928/1228 (75.6%)
# Similarity: 928/1228 (75.6%)
# Gaps: 26/1228 ( 2.1%)
# Score: 3417.0
#
#
#=======================================
BSNT_00712___ 1 ATGGAGCAGCAGAAAAAGACAGCAGGAAAAAAAG-----CGGGAAGCTGG 45
||||||||..|||||||.|||||.|| |||| |||.|| .|||
RBAM_004290__ 1 ATGGAGCAAAAGAAAAAAACAGCCGG----AAAGGCTTCCGGCAA-ATGG 45
BSNT_00712___ 46 TCATTGCTGATGGGCGCCGCCTTTTTAATGGCGACATCAGCAATCGGACC 95
||..|.||..|.|||||..|.|||||.||||||||||||.|||||||.||
RBAM_004290__ 46 TCGCTTCTTTTAGGCGCGACATTTTTGATGGCGACATCATCAATCGGGCC 95
BSNT_00712___ 96 GGGTTTCCTCACCCAAACCGCAACATTCACAAACACACTCGCAGCAAGCT 145
.||.||.||.||.|||||.||.||.||.||.||||||.|.||.|||||||
RBAM_004290__ 96 CGGCTTTCTGACGCAAACGGCCACGTTTACCAACACATTGGCGGCAAGCT 145
BSNT_00712___ 146 TCGGTTTTGTCATCTTAATCTCTATTATTTTAGATATTTTCGCCCAAACC 195
||||.|||.||||.|||||.|||||||||||.||.||||||||.||||||
RBAM_004290__ 146 TCGGATTTATCATTTTAATTTCTATTATTTTGGACATTTTCGCGCAAACC 195
BSNT_00712___ 196 AATGTGTGGCGCATCATCGCAGTTTCTGGAAAACGAGGTCAGGAAATTGC 245
|||||.|||||.||.|||||.|||||.|||||.||.||.||.||.|||||
RBAM_004290__ 196 AATGTATGGCGGATTATCGCGGTTTCCGGAAAGCGCGGCCAAGAGATTGC 245
BSNT_00712___ 246 GAATATGGTGCTTCCCGGACTGGGATATTTCATCGCCATTCTCGTCGTGC 295
.||||||||||||||.||....||.|||..|||.||..||||.|||||||
RBAM_004290__ 246 CAATATGGTGCTTCCGGGCGCCGGTTATGCCATTGCTTTTCTGGTCGTGC 295
BSNT_00712___ 296 TTGGCGGACTAGCTTTTAATATTGGGAATATCGGAGGGGCCGGGCTGGGA 345
|.||||||||.||.||||||||.||.||.|||||.||.||.||.||.||.
RBAM_004290__ 296 TCGGCGGACTTGCGTTTAATATCGGAAACATCGGCGGCGCGGGTCTCGGT 345
BSNT_00712___ 346 CTTCAGGTGCTGTTCGGCATTACACCTGAAACAGGCGCTTTAATCAGTGC 395
|||||.||..|.|||||.||.|.|||.||.|..||||||||||||||.||
RBAM_004290__ 346 CTTCAAGTATTATTCGGGATCAAACCGGAGATCGGCGCTTTAATCAGCGC 395
BSNT_00712___ 396 CGTTATCGCCATTTTGATTTTTGTCATCAAGGAAGCAGGAAAAGCGATGG 445
.|...||||..|..|||||||||||||.||||||||.|||||||..||||
RBAM_004290__ 396 AGCGGTCGCGGTGCTGATTTTTGTCATAAAGGAAGCCGGAAAAGTCATGG 445
BSNT_00712___ 446 ACCGTTTTACGCAAATCGCGGGGTTCGTGATGATTATTTTAACGGTCTAC 495
|||||||||.|||.|||||.||..||||.|||||..|.||.||.||.||.
RBAM_004290__ 446 ACCGTTTTATGCAGATCGCCGGAATCGTCATGATCGTATTGACTGTGTAT 495
BSNT_00712___ 496 GTTGCGGCGACGACAGCTCCTCCGGTCGGACAGGCAGTCGCAAATACATT 545
|||||.|..|||||.|||||.|||||||||||.||.||.|..||.||.||
RBAM_004290__ 496 GTTGCCGTAACGACGGCTCCGCCGGTCGGACACGCCGTTGTGAAAACTTT 545
BSNT_00712___ 546 CGTCCCGGAACACATCAGCATATTTGCCATTGTCACCCTAGTGGGCGGAA 595
..|.||.||.||.|||||..|..|.||.||.||.||.||.||.|||||.|
RBAM_004290__ 546 TATGCCTGATCATATCAGTGTGCTGGCGATCGTGACGCTTGTCGGCGGCA 595
BSNT_00712___ 596 CCGTCGGCGGTTATATCACATTTGCCGGAGGACACCGTTTGCTTGATGCC 645
|.||||||||.||.||.|||||||||||.||.|||||||||||||||.|.
RBAM_004290__ 596 CGGTCGGCGGATACATTACATTTGCCGGCGGCCACCGTTTGCTTGATTCA 645
BSNT_00712___ 646 GGAATTAAAGGGAAGGAA-TCCATTCCGCAGGTGACAAAAAGCTCGGTTG 694
||.||..||||||||||| ||| |.||.|||||.||.||||||||..|..
RBAM_004290__ 646 GGCATCCAAGGGAAGGAAGTCC-TCCCTCAGGTTACGAAAAGCTCCATCA 694
BSNT_00712___ 695 TCGGCATTTTAATTACATCTGTCATGCGTATCGCTCTTTTTCTTGCGGTT 744
..|||.||.|.||||||||..|.|||||.||.||.||.|||||.||.||.
RBAM_004290__ 695 CAGGCGTTCTGATTACATCGATTATGCGGATTGCCCTGTTTCTCGCCGTG 744
BSNT_00712___ 745 CTAGGCGTTGTATCGAAAGGCCTGCACATCGA---TGAAAGCAACCCGGC 791
||.|||||.||.||.||.||||||..|||.|| ||| .||.|||||
RBAM_004290__ 745 CTCGGCGTCGTCTCAAAGGGCCTGAGCATTGATCCTGA---TAATCCGGC 791
BSNT_00712___ 792 GGCTTCTGTCTTCAAGCTGGCTGCTGGAAATGTCGGTTATAAAATTTTCG 841
|||||||||.|||..|||.||.||.||||||||.||.|||||||||||||
RBAM_004290__ 792 GGCTTCTGTATTCCGGCTTGCGGCGGGAAATGTAGGCTATAAAATTTTCG 841
BSNT_00712___ 842 GATTGATCATGTGGTCTGCGGCGATTACGTCTGTTATTGGAGCAGCCTAT 891
|..|.||||||||||||||.||.||.||||||||.||.||.||.||||||
RBAM_004290__ 842 GCGTCATCATGTGGTCTGCCGCTATCACGTCTGTCATCGGCGCCGCCTAT 891
BSNT_00712___ 892 ACATCTGTTTCATTTTTCAAGACCTTTTCTCCAAAAATTGAAAAGAATTC 941
|||||.||.|||||||||||..|.|||||..|||||||.||||||.|.||
RBAM_004290__ 892 ACATCGGTATCATTTTTCAAATCATTTTCAACAAAAATCGAAAAGCACTC 941
BSNT_00712___ 942 ACGCGGTATTATTATCGGATTTATTGTGGTTTCTAC-GTTAGCTTTTGTC 990
||..||..|.||||||||.|||||..|.||.||.|| .||| .||||||.
RBAM_004290__ 942 ACATGGCGTCATTATCGGTTTTATCATCGTATCCACTCTTA-TTTTTGTT 990
BSNT_00712___ 991 ACAATCGGCCAGCCTGCGAAGATCCTCGTCCTTGTCGGTTCACTGAACGG 1040
||.||||||||||||||.||.||.||.|||...||||||||.||.|||||
RBAM_004290__ 991 ACGATCGGCCAGCCTGCCAAAATTCTGGTCGCGGTCGGTTCGCTTAACGG 1040
BSNT_00712___ 1041 CTTAATTCTGCCGATTGCGCTCGGAACGCTGCT--TGTT-GCCGCCTACA 1087
|||||||||||||.||||..| |.||.||.| |||| |.|||.||.|
RBAM_004290__ 1041 CTTAATTCTGCCGCTTGCATT---AGCGATGATACTGTTGGGCGCTTATA 1087
BSNT_00712___ 1088 AGAAAAACATTGTCGGTGATTATAAGCATCCGCTTTGGCTGACAAGCACA 1137
|||||||.||.|||||.|||||.|||||||||.|.|||||.||.|...||
RBAM_004290__ 1088 AGAAAAAAATCGTCGGCGATTACAAGCATCCGATCTGGCTCACGATTGCA 1137
BSNT_00712___ 1138 GGCGCGCTTGTAGTGATTGTAATGGCAGTTATGGGAATCTACACGTTAAT 1187
||.|||.|.||||||.||||.|||||.||||||||.|||||.||.|||.|
RBAM_004290__ 1138 GGGGCGATCGTAGTGGTTGTCATGGCGGTTATGGGCATCTATACATTATT 1187
BSNT_00712___ 1188 TACACAACTTCCTCAATTGTGGAGCTGA 1215
.||.|||.|.||.||..|.|||||||||
RBAM_004290__ 1188 CACGCAAATGCCGCAGCTATGGAGCTGA 1215
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