Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00728 and RBAM_004390

See Amino acid alignment / Visit BSNT_00728 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:30
# Commandline: needle
#    -asequence dna-align/BSNT_00728___mtlR.1.9828.seq
#    -bsequence dna-align/RBAM_004390___mtlR.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00728___mtlR-RBAM_004390___mtlR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00728___mtlR-RBAM_004390___mtlR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00728___mtlR
# 2: RBAM_004390___mtlR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2159
# Identity:    1542/2159 (71.4%)
# Similarity:  1542/2159 (71.4%)
# Gaps:         148/2159 ( 6.9%)
# Score: 5351.5
# 
#
#=======================================

BSNT_00728___      1 ATGTATATGACTGCCAGAGAACAAAAGCTGTTAAAGCACTTATTATTACA     50
                     |||||||||||.||.|||||||||||..|..|.||.||..|||||.|.||
RBAM_004390__      1 ATGTATATGACAGCGAGAGAACAAAAATTAATGAAACATCTATTACTGCA     50

BSNT_00728___     51 AAACAGATATATAACCGTAACTGAGCTTGCTG-AGCTGATGCAAGTCAGC     99
                     .|||.|.||....||.||...|||.||.||.| |||| .|.|||||||||
RBAM_004390__     51 GAACCGGTACGAGACAGTGCATGAACTGGCGGAAGCT-TTACAAGTCAGC     99

BSNT_00728___    100 ACGAGAACCATTCACAGGGAACTCAAATCAATTAAACCGCTGATGGAAAC    149
                     ||.||||||.|||||.|.||..|.|||.||||.||||||.||||||||.|
RBAM_004390__    100 ACAAGAACCGTTCACCGCGAGTTAAAAACAATCAAACCGATGATGGAATC    149

BSNT_00728___    150 CGTGGGGCTTACGTTAGATAAACAGCCCGGTAAAGGGTTGAAAGCAGTGG    199
                     ..|.||.||..|..|.||||||||||||||.|||||..|||||||.||.|
RBAM_004390__    150 ATTCGGTCTGGCACTTGATAAACAGCCCGGCAAAGGACTGAAAGCGGTAG    199

BSNT_00728___    200 GAAGTCCCGAGGATAAACAAAAGCTGCTTACTGATTTATCATATGAACAG    249
                     |||..||.|||||.||||||||.||.||..|.||..|.||.|||||||||
RBAM_004390__    200 GAAACCCGGAGGACAAACAAAAACTCCTGTCAGACCTGTCCTATGAACAG    249

BSNT_00728___    250 CATGAATACAGCGCCGACGAACGGAAACTGCTCATTCTTTGTTCGTTATT    299
                     .|||||||||||||.||.||.||||||||..|.|||||.|||||..||||
RBAM_004390__    250 TATGAATACAGCGCTGAGGAGCGGAAACTTTTAATTCTATGTTCACTATT    299

BSNT_00728___    300 AGAGTCTCAGGAGCCCGTCAAACTGTACACGCTTGCTCATGATCTCCAGG    349
                     |||||||||.|||||..||||.||.||||..||.||..|.||.||.||.|
RBAM_004390__    300 AGAGTCTCAAGAGCCGATCAAGCTCTACAGTCTGGCGAACGAACTGCAAG    349

BSNT_00728___    350 TGACGAATGCCACGGTCAGCTATGACTTAGATGAGCTCGAGAAGTGGATT    399
                     |.||.||.||.|||.|||||||||||.|.||||||||.||||..||||||
RBAM_004390__    350 TAACAAACGCGACGATCAGCTATGACCTGGATGAGCTGGAGACTTGGATT    399

BSNT_00728___    400 TCTCCCTTCGGACTGACACTGATCCGCAAAAGAGGTTTTGGCATCCAGCT    449
                     .|.||||||||..||||.||||||||.|||||.||.||.|||||.|||||
RBAM_004390__    400 GCGCCCTTCGGCTTGACGCTGATCCGAAAAAGGGGCTTCGGCATTCAGCT    449

BSNT_00728___    450 CATAGGGCCGGAGAATGCGAAACGGAAAATTGTCGGCAACTTGATTGTGA    499
                     .|..||||||||.|||||||||||||||||.||||||||..|.||.||.|
RBAM_004390__    450 GACGGGGCCGGAAAATGCGAAACGGAAAATCGTCGGCAATCTCATCGTCA    499

BSNT_00728___    500 ACCGTCTCGACATCCAAATGTTTTTGGAAGCGGTTGAATTAAACATCAAA    549
                     ||||.||.||.||.||||..||||||||||||||||||||.||.||.|||
RBAM_004390__    500 ACCGCCTTGATATTCAAAGCTTTTTGGAAGCGGTTGAATTGAATATTAAA    549

BSNT_00728___    550 GGAAAAACCGATTCTTCAGAGAAAATGTTCGGGGTTGTCAGCAAAGGTGA    599
                     ||||||.|.|||..|.|.||.|||||||||||.||.||.|..||||..||
RBAM_004390__    550 GGAAAACCGGATGATGCTGAAAAAATGTTCGGCGTCGTAAATAAAGCGGA    599

BSNT_00728___    600 GCTGCTAAAAATGGAGCGCATCTTATTTCAGCTCAAAGAAAAAATCGCTT    649
                     .||..|.||||||||.||..|||||.||||||||||.|||||||||||..
RBAM_004390__    600 ACTTTTGAAAATGGACCGGCTCTTAATTCAGCTCAAGGAAAAAATCGCGA    649

BSNT_00728___    650 TTTCATTGTCCGACAGCTCCTATATAGCGCTCGTCGTCCATCTGACGTAT    699
                     |..|.||.||.||||||||.||.||.|||||.|..||.|||.|.||.|.|
RBAM_004390__    650 TCGCCTTATCTGACAGCTCATACATGGCGCTTGCGGTTCATTTAACCTTT    699

BSNT_00728___    700 GCGATCGAACGAATTAAGCTTGGGGAAACCATCACCATGGAGCAAAATGA    749
                     |||||.||.||.||.|.|||.||.||||||||.||.||||||.|....||
RBAM_004390__    700 GCGATGGACCGGATCAGGCTCGGAGAAACCATTACGATGGAGGATTCGGA    749

BSNT_00728___    750 GCTTGAGGAACTGAAGAATGCGAAGGAATCCAGCTCGGCTCTTGAAATCG    799
                     .||..|.|..|||.||.|..|||||||.|.|.||||.||.||.|||||  
RBAM_004390__    750 ACTAAAAGCGCTGCAGCAGACGAAGGAGTACGGCTCTGCGCTGGAAAT--    797

BSNT_00728___    800 CGGGC----GAGCTTGAACGTGCCTTCGGCGTGACGATTCCAGAGGCGGA    845
                       |||    |||||||||...||.||||||||..|.|||||.||.||.||
RBAM_004390__    798 --GGCAAAAGAGCTTGAAAAAGCGTTCGGCGTTTCAATTCCGGAAGCTGA    845

BSNT_00728___    846 GGTCGGCTATATTACAATCCATCTTCGAAGCGCCAATCGAAAATACAAAA    895
                     |.||||.|||||.||.||.|||.|.||.||||||||.||.||||||||||
RBAM_004390__    846 GATCGGATATATCACCATTCATTTGCGGAGCGCCAACCGCAAATACAAAA    895

BSNT_00728___    896 CAGAATACAAAGCGCAGGAAATTGAGCTGGAAACAGCCCTGCAAACAAAG    945
                     |.||||.||||.||.|.||.||.|||.|.|||||.|||.|||||||.|||
RBAM_004390__    896 CGGAATTCAAACCGGAAGACATAGAGGTTGAAACGGCCTTGCAAACGAAG    945

BSNT_00728___    946 CGGCTCATTGCTTTTATTTCAGACAAAATCAGAATGGATCTGACGAAAAA    995
                     |.|||.||.|..||.|||||.||.|||||.|.|||.|||||||||.||||
RBAM_004390__    946 CAGCTGATCGGCTTCATTTCTGAAAAAATTAAAATTGATCTGACGGAAAA    995

BSNT_00728___    996 CTACTCTTTATATGAAGGCTTGATTGCCCATTTGGAGCCGGCCGTCAGCC   1045
                     ...||||||||||||.||.||.||.||||||.|.|||||.||..|||.||
RBAM_004390__    996 TGGCTCTTTATATGACGGTTTAATCGCCCATCTCGAGCCTGCGATCAACC   1045

BSNT_00728___   1046 GCATAAAAGAAAATATTGAGATATACAATCCGATGAAGGAACAAATCAAG   1095
                     |..|||||||||||||.||.||.|||||.|||||||..||.|||||.||.
RBAM_004390__   1046 GGGTAAAAGAAAATATCGACATGTACAACCCGATGACCGAGCAAATTAAA   1095

BSNT_00728___   1096 CGCGATTATTTTCTGCTTTATATGGCGATCGAAGAAGGCGTCGAAAAGTA   1145
                     |||||.||.||||||||.||.|||||..|.||||||||..|.|||||.|.
RBAM_004390__   1096 CGCGACTACTTTCTGCTGTACATGGCCGTAGAAGAAGGAATGGAAAAATT   1145

BSNT_00728___   1146 TTTTCCGGGCATGTCCTTT-ACTGATGATGAAATCGCTTTTATCGTTCTT   1194
                     .||||||||..| ||.||| .|||||.||||.||||||||.|||||||||
RBAM_004390__   1146 CTTTCCGGGGCT-TCTTTTCTCTGATAATGAGATCGCTTTCATCGTTCTT   1194

BSNT_00728___   1195 CACTTTGGCTCGGCTCTTGAAATCAAAAAAGAAGAAGCAAAAGTGAAAGC   1244
                     |||||.|||||.|||.|.|||||||||...|||||.||.||..|.|||||
RBAM_004390__   1195 CACTTCGGCTCCGCTTTGGAAATCAAACGGGAAGAGGCGAAGATCAAAGC   1244

BSNT_00728___   1245 GCTTGTCGTCTGCTCAAGCGGGATCGGCTCCTCGAAAATGCTTGCCTCCA   1294
                     |||..|||||||.||||||||.|||||.||.||.||||||||.||.||||
RBAM_004390__   1245 GCTGATCGTCTGTTCAAGCGGCATCGGGTCGTCCAAAATGCTCGCATCCA   1294

BSNT_00728___   1295 GACTGAAAAAAGAAATGCCGGAAATTGAATCGTTTGATATGTCATCCCTG   1344
                     |.|||||||||||..|..|||||||....||.|||||||||||.|||||.
RBAM_004390__   1295 GGCTGAAAAAAGAGCTTTCGGAAATCCGTTCCTTTGATATGTCTTCCCTC   1344

BSNT_00728___   1345 ATCGAGCTAAAGGGGAAGGAT-----GTTCA-AGCCTATGATATGATTGT   1388
                     |||||.||      |||||||     ..||| .||.|||||.|||||.||
RBAM_004390__   1345 ATCGAACT------GAAGGATCGAGACATCACCGCGTATGACATGATCGT   1388

BSNT_00728___   1389 GTCCACTGTACCGATTCCTTATGAAAACATTGATTACATCATGGTCAGCC   1438
                     .||.||.||.|||||.||.||||||||||||||||||.||||||||||.|
RBAM_004390__   1389 ATCAACCGTTCCGATCCCGTATGAAAACATTGATTACGTCATGGTCAGTC   1438

BSNT_00728___   1439 CGCTATTAAATGAGGAAGACGCAAACCAGGTCAAGCAGTATATCAAGCGG   1488
                     ||||.|||||.||.||||||||..|.||||||||||||||.|||||..|.
RBAM_004390__   1439 CGCTTTTAAACGAAGAAGACGCTGATCAGGTCAAGCAGTACATCAAAAGA   1488

BSNT_00728___   1489 AAGATTCCCCTTATTCTTAACAAAAAAAGAAGCACG----AAG-GAAGAG   1533
                     ||.|||||.||.||||||.||||||||||||  |||    ||| ||||||
RBAM_004390__   1489 AAAATTCCGCTGATTCTTGACAAAAAAAGAA--ACGGCAAAAGAGAAGAG   1536

BSNT_00728___   1534 GCGCAGCAAGCTGATGTACCTGACATGCTAGAGGCGGCGGAAAGCATAGG   1583
                     ..|||||   |.||....|||||.|||||.||.|||||          .|
RBAM_004390__   1537 AAGCAGC---CGGAGACGCCTGATATGCTGGAAGCGGC----------CG   1573

BSNT_00728___   1584 GCGGTAT-----AT-----GGAGGTTATTCAAAATGTTCTGCGCCATTTT   1623
                     ||.||||     ||     ||.||||||.||||..||.|||||..|.|||
RBAM_004390__   1574 GCCGTATGGCGCATTACGCGGCGGTTATCCAAAGCGTGCTGCGGAACTTT   1623

BSNT_00728___   1624 ACGCTAGCTCAACTC----AAAACAAACCCGGACCATAGCATGCTTCTGC   1669
                         |.|.||||.||    .|..|||||.|||...||             
RBAM_004390__   1624 ----TCGATCAAATCCATTGATTCAAACACGGCGTAT-------------   1656

BSNT_00728___   1670 TAGAGC--TTTTTCAAC-------------AGCTG----AAGAAGGATGG   1700
                       ||||  |||||.|||             .||||    |||||||||  
RBAM_004390__   1657 --GAGCTGTTTTTGAACCGTATGTTTGACATGCTGGAGCAAGAAGGAT--   1702

BSNT_00728___   1701 CCTGATCCGTGATCCGGAAAAAGCCGAGGTTTGCCTGGCTGAGCGGGAGA   1750
                       ||.|.|.|.||.|..|||||.|||.|....||||.||||||||.||..
RBAM_004390__   1703 --TGGTTCATAATGCCCAAAAAACCGCGCAGCGCCTTGCTGAGCGTGAAC   1750

BSNT_00728___   1751 AACAAGGGGGATTGGGAATCCCCGGAACAAACATGGCGCTTTATCATCTC   1800
                     .|||.||.|||.|.||.||.||.|||||....|||||.||.||.||||||
RBAM_004390__   1751 GACAGGGCGGACTCGGCATTCCGGGAACGGCGATGGCCCTGTACCATCTC   1800

BSNT_00728___   1801 AAAAATGATGAAATCGTCCTGCCTTTTTTCAAAATGTTTGATCTCAGCAC   1850
                     ||||||||.|||||.|||..|||||||||||||||.|.||||.|.| |..
RBAM_004390__   1801 AAAAATGAAGAAATTGTCACGCCTTTTTTCAAAATTTATGATTTGA-CGG   1849

BSNT_00728___   1851 CTCCTATGAAGTG--GATGGCATGGACGGAATTACCCTCA-GGATGA-CA   1896
                     |||| |||.||||  .|.|||||||||||||.|.||||.| .|..|| |.
RBAM_004390__   1850 CTCC-ATGCAGTGTCAAAGGCATGGACGGAAATTCCCTGACCGTCGACCG   1898

BSNT_00728___   1897 CGCATCCTCGTCATGATGGCGCCTGGCTCATTAT--CTGCTGAAGGCTCG   1944
                     |||.|  |.||.||||||||||| ||||.| |||  |.||||||||.|||
RBAM_004390__   1899 CGCTT--TGGTGATGATGGCGCC-GGCTGA-TATGGCCGCTGAAGGGTCG   1944

BSNT_00728___   1945 GAGATTTTAAGCGCGATCAGCTCGGCAATTATCGAGAGCGGAG-------   1987
                     ||.||..||||.|||.||||||||||.||.||||||..||.||       
RBAM_004390__   1945 GAAATACTAAGTGCGGTCAGCTCGGCCATCATCGAGTCCGAAGGCAGTAT   1994

BSNT_00728___   1988 -AAAGCATGGCGGGGTTTCAG--GAAGAAGGAGAACAAGAATTGTATCAG   2034
                      |||||        .||.|||  |.||.|.|||..|  ||.||.||..|.
RBAM_004390__   1995 AAAAGC--------CTTCCAGACGGAGGATGAGGCC--GATTTATACAAA   2034

BSNT_00728___   2035 CGGTTAAAC-CGCATATTTT-TCA---CAT---GGATGAAAGAAAAAAAC   2076
                     ||.|||||| .|| |.|||| |||   |||   ||| |||||.|.|    
RBAM_004390__   2035 CGTTTAAACAAGC-TGTTTTATCATTTCATTCAGGA-GAAAGGACA----   2078

BSNT_00728___   2077 ATACTGTAA   2085
                       .|.||||
RBAM_004390__   2079 --GCGGTAA   2085


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