Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_00735 and RBAM_004420

See Amino acid alignment / Visit BSNT_00735 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:30
# Commandline: needle
#    -asequence dna-align/BSNT_00735___ydaE.1.9828.seq
#    -bsequence dna-align/RBAM_004420___ydaE.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00735___ydaE-RBAM_004420___ydaE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00735___ydaE-RBAM_004420___ydaE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00735___ydaE
# 2: RBAM_004420___ydaE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 524
# Identity:     389/524 (74.2%)
# Similarity:   389/524 (74.2%)
# Gaps:          40/524 ( 7.6%)
# Score: 1450.0
# 
#
#=======================================

BSNT_00735___      1 ATGGGCATCACGAAAGAAGAAGTGAA--CAGCTACTATCAAAAAGCAGGG     48
                     |||...||..|||||.|.||.|||||  ||  ||||||||||||||.||.
RBAM_004420__      1 ATGACGATATCGAAACATGATGTGAATGCA--TACTATCAAAAAGCGGGA     48

BSNT_00735___     49 ATTGTATTAACGGACGAGGAAGT---AGAC---CAAATCCAGCTGATGGA     92
                     ||.||..|.||.||..|.|||||   ||||   ||||||      |||||
RBAM_004420__     49 ATCGTTCTGACTGATAATGAAGTCGAAGACATTCAAATC------ATGGA     92

BSNT_00735___     93 TTACGGCTTAGGAAA-----AGAAAGAAAAGTCGGGCTCCAGCTCTTCGT    137
                     ||||||||||||.||     ||   ||||  .||||||.|||||.||..|
RBAM_004420__     93 TTACGGCTTAGGCAAGCTTGAG---GAAA--CCGGGCTTCAGCTGTTTAT    137

BSNT_00735___    138 CTACGTCAATACAGACCGTTATTGTTCAAAGGAATTGGTGCTGTTTCCGG    187
                     .|||||.|||||.|||||.||.|||||.||.|||||||||||.||.|||.
RBAM_004420__    138 TTACGTGAATACCGACCGCTACTGTTCGAAAGAATTGGTGCTCTTCCCGC    187

BSNT_00735___    188 GACAGACTTGCCCGGAACACCGCCATCCGCCGGTCGACGGCCAGGAAGGC    237
                     |.|||||.||.|||||||||||||||||||||||||.|.||.||.|.||.
RBAM_004420__    188 GCCAGACGTGTCCGGAACACCGCCATCCGCCGGTCGGCAGCGAGAAGGGA    237

BSNT_00735___    238 AAGCAGGAGACCTTCCGCTGCCGCTACGGAAAAGTGTATCTTTACGTAGA    287
                     ||.||.|||||.|||||||||||||..||.||.||||||||.|||||.||
RBAM_004420__    238 AAACAAGAGACATTCCGCTGCCGCTGGGGGAAGGTGTATCTCTACGTGGA    287

BSNT_00735___    288 AGGAGAAAA-------AACGCCGCTTCCAAAAGTTCTCCCTCCTCAGGAA    330
                     |||.|||||       |||       ||||..||.|||||.||..|.|||
RBAM_004420__    288 AGGCGAAAAGACAGAGAAC-------CCAAGCGTCCTCCCGCCGGAAGAA    330

BSNT_00735___    331 GACAGAGAACACTATACGGTCTGGCACGAAATTGAGCTAGAACCGGGCGG    380
                     ||||..|||.||||.||.||||||||.|||||||.|||.||.||||||||
RBAM_004420__    331 GACAAGGAATACTACACCGTCTGGCATGAAATTGTGCTTGAGCCGGGCGG    380

BSNT_00735___    381 GCAATATACAATCCCCCCGAATACAAAGCATTGGTTCCAGGCCGGGGAAG    430
                     .|||||.||.||.||.|||.||||.|||||||||||.||.||.||.||||
RBAM_004420__    381 ACAATACACCATTCCGCCGGATACGAAGCATTGGTTTCAAGCGGGAGAAG    430

BSNT_00735___    431 AAGGTGCCGTCGTGACGGAAATGTCATCGACGAGCACGGATAAACATGAT    480
                     ||||.||.|||||.|||||||||||||||||.|||||||||.|.||.|||
RBAM_004420__    431 AAGGGGCGGTCGTCACGGAAATGTCATCGACAAGCACGGATGATCACGAT    480

BSNT_00735___    481 ATCTTTACCGATCCAAGAATATAA    504
                     .|.||.|||||.||..|.||.|||
RBAM_004420__    481 GTTTTCACCGACCCGCGCATTTAA    504


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.