Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01750 and RBAM_004570
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:27
# Commandline: needle
# -asequence dna-align/BSNT_01750___yhfO.1.9828.seq
# -bsequence dna-align/RBAM_004570.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01750___yhfO-RBAM_004570.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01750___yhfO-RBAM_004570.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01750___yhfO
# 2: RBAM_004570
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 546
# Identity: 248/546 (45.4%)
# Similarity: 248/546 (45.4%)
# Gaps: 219/546 (40.1%)
# Score: 453.0
#
#
#=======================================
BSNT_01750___ 1 ATGAACATTCGCCAAGCAAAGA-CATCAGATGCAGCAG--CCCTCGCGCC 47
|.|| .||||||.|| |||| |.|| ..
RBAM_004570 1 ------------------ATGATAATCAGAAGC-GCAGAACACT----AT 27
BSNT_01750___ 48 GCTGTTTAACCA----------------------ATATCG-GGAATTTTA 74
|.|||..|||.| |||||| |||.|||||
RBAM_004570 28 GATGTAAAACAATTGACCGATTTAATGTATTTATATATCGTGGATTTTTA 77
BSNT_01750___ 75 T---AGAC---AGGCATCCGATTTGCAAGGGGCGGAG-----GCTTTT-- 111
| |||| ||.|| |||| |||.|| || .|.|||
RBAM_004570 78 TAAAAGACCTAAGCCA-CCGA-TTGAAA-------AGATACATCATTTGA 118
BSNT_01750___ 112 TTGAAAGCTCGTTTG-GAAAATCATGAGTCTGTTATT--TTGACAGCAGA 158
||||||..|..|||| |||.|.||.|.||.|...||| || ||.||
RBAM_004570 119 TTGAAATGTTATTTGAGAAGAACAGGGGTATTCAATTCGTT----GCTGA 164
BSNT_01750___ 159 AGAAAATGGAGAATTCATAGGTTTTACCCAGCTCTATCCAACGTTTTCTT 208
|.||.||||..||.|.||.|| ||.|.||||.||.|.||
RBAM_004570 165 ACAAGATGGGAAACTTATTGG------------CTTTGCAACATTATATT 202
BSNT_01750___ 209 CT-GTGTCA--ATGA--AAAGGATCTACA-------TATTAAATGACTTA 246
.| ||.|.| |.|| ||||.|..||.| ||.|.|||||.|||
RBAM_004570 203 TTAGTTTTAGTACGACGAAAGCAGATAAAATAACAGTAATGAATGATTTA 252
BSNT_01750___ 247 TTTGTCGCTCCTTATGCTCGTACAAAGGGAGCGGGCGGCCGGCTACTTTC 296
||.| ||.|.| |.||||..||.|| |||
RBAM_004570 253 TTCG----------TGATAG-AAAAAGCAAGAGG---------TAC---- 278
BSNT_01750___ 297 TGCCGCAAAGGATTATGCAGGGGAAAACGGGGCAAAA----TGTTTAACG 342
|||| ||| ||.||| |||||||
RBAM_004570 279 --------AGGA----GCA------------GCCAAAGAACTGTTTAA-- 302
BSNT_01750___ 343 CTTCAGACTGAGCACC----ACAACAGGAA--GGCAAGAAGCTTGTATGA 386
.||| ||.|.|.| ||||.||.|| || |||||.
RBAM_004570 303 ---AAGA-TGCGAAACATTTACAAAAGAAAACGG----------GTATGC 338
BSNT_01750___ 387 GCAAAACGGCTATGAAGAGGATACCGG---------ATT----TGTCCAT 423
||| ||||..|.|||||.|.| ||| ||..||.
RBAM_004570 339 GCA-------TATGTCGTGGATAACTGCATCTGATAATTACCGTGCACAA 381
BSNT_01750___ 424 TATTCTCTCAA------TGTGCC-------------GGCGAAGTGA 450
.|||||.|.|| .|||.| ||| |||
RBAM_004570 382 AATTCTATGAAAAGATGGGTGGCTCCGTTGGAAATTGGC----TGA 423
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