Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03473 and RBAM_004580

See Amino acid alignment / Visit BSNT_03473 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:42
# Commandline: needle
#    -asequence dna-align/BSNT_03473___ypzD.1.9828.seq
#    -bsequence dna-align/RBAM_004580___ypzD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03473___ypzD-RBAM_004580___ypzD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03473___ypzD-RBAM_004580___ypzD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03473___ypzD
# 2: RBAM_004580___ypzD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 213
# Identity:     159/213 (74.6%)
# Similarity:   159/213 (74.6%)
# Gaps:           0/213 ( 0.0%)
# Score: 579.0
# 
#
#=======================================

BSNT_03473___      1 ATGATTGATTATCCTATTAATATAAACAACGTTTCCGGGAACAGTGTAAT     50
                     |||||.||||..||||||||.||.||.|||.|..|.||.||..|.||.||
RBAM_004580__      1 ATGATGGATTCCCCTATTAAAATTAATAACTTAACAGGAAATGGAGTTAT     50

BSNT_03473___     51 TAACGTAGGCGGCGCTTTTATGATCAGGCCTTTAACTTTGTCCAAATCTG    100
                     .||.||.||||||||.||.|..||||..|||.||||....||.|||.|.|
RBAM_004580__     51 CAATGTCGGCGGCGCGTTAACCATCACCCCTATAACCGCTTCAAAAACAG    100

BSNT_03473___    101 TGTTTGGCTCCGGAGGTTTAAACACAGGAATTGTCTTTGAAAATAACTTT    150
                     |||||||.||||||||||||||.||.|||||||||.|..||||.||||.|
RBAM_004580__    101 TGTTTGGATCCGGAGGTTTAAATACTGGAATTGTCATCCAAAACAACTCT    150

BSNT_03473___    151 GTAAGCAAGGCTAAAATGATTAATCATCAATTTACTGATCAGAACGTCAC    200
                     ||||||.||.|.|||||||||...|||||||||.|.||||||||.||.|.
RBAM_004580__    151 GTAAGCCAGTCGAAAATGATTGGCCATCAATTTTCAGATCAGAAGGTTAT    200

BSNT_03473___    201 CAAAACTTTTTAA    213
                     .|||||.|||||.
RBAM_004580__    201 AAAAACGTTTTAG    213


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