Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home
About
Genes
DNA alignment: BSNT_00757 and RBAM_004720

See Amino acid alignment / Visit BSNT_00757 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:32
# Commandline: needle
#    -asequence dna-align/BSNT_00757___ydbA.1.9828.seq
#    -bsequence dna-align/RBAM_004720___ydbA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00757___ydbA-RBAM_004720___ydbA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00757___ydbA-RBAM_004720___ydbA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00757___ydbA
# 2: RBAM_004720___ydbA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 837
# Identity:     579/837 (69.2%)
# Similarity:   579/837 (69.2%)
# Gaps:          48/837 ( 5.7%)
# Score: 1932.5
# 
#
#=======================================

BSNT_00757___      1 GTGCCAACAGAACGAAAAG-------AAGACTTACATCAGCAATTAAAAG     43
                     |||.||..|||.||.|.||       ||||          |||.|.|.||
RBAM_004720__      1 GTGACAGAAGAGCGGACAGACCTGGAAAGA----------CAACTGAGAG     40

BSNT_00757___     44 AGATAGAGAAATGGGAAAAAGATCAGCAAAAAGTCTGGTTTTGGGAAAAG     93
                     |.||..|.|||||||||||.|..|||||.|..||...|||.|||.|||..
RBAM_004720__     41 ACATTCAAAAATGGGAAAAGGCGCAGCAGAGGGTGATGTTCTGGCAAACA     90

BSNT_00757___     94 CTCAGCCGTCTCCCGTTTCAGCTGCTGGACAAGCTGACACCGGAATTCAT    143
                     .|||.|||..|.|||||||||||..|||||||||||||||||.||||.||
RBAM_004720__     91 TTCACCCGCTTGCCGTTTCAGCTTTTGGACAAGCTGACACCGCAATTTAT    140

BSNT_00757___    144 CCAGAAAAAGATCGG---CAAGCTCTTGGATGAGGTCGGCAGC-TTTGTT    189
                     .||||..||.|||||   ||..|||   ||||| ..|||.|.| |||.||
RBAM_004720__    141 TCAGAGGAAAATCGGACTCATTCTC---GATGA-AACGGGAACGTTTATT    186

BSNT_00757___    190 CAAACAGGCGGACAGTACCTGACATCTGAAAAACAGATTATCAGGATGTT    239
                     ||..||||||||||||||||.|||||.|||||.|..||.||.|..|.|||
RBAM_004720__    187 CAGTCAGGCGGACAGTACCTTACATCAGAAAAGCGCATCATGAAAAAGTT    236

BSNT_00757___    240 TCAAAAGAAACTGCCGGAGGAGATCTTTGAATCGCTGGAGGACATCCGGA    289
                     ||||||....||||||.|.|..|..|.|.||.||||..|.||||||||.|
RBAM_004720__    237 TCAAAAACGGCTGCCGCACGGTACATGTCAAACGCTTCACGACATCCGCA    286

BSNT_00757___    290 AAGCGCCTCTTCCTGTCATGGATGAAATTGCGGAAGGAAT---GGGCAAA    336
                     |.|||||.|||.|.||||||||.|||||.||.||||..||   |.|.|.|
RBAM_004720__    287 ATGCGCCGCTTGCCGTCATGGACGAAATCGCAGAAGCCATAGCGCGTACA    336

BSNT_00757___    337 AACAGAACCAACGCAGCAACCGTTCAAGGCGCGACAACCGGTGTGGGCGG    386
                     |.|..|   ||.||.||.||.||.||.||.||..||||.||.||.|||||
RBAM_004720__    337 AGCGTA---AAGGCCGCGACGGTGCAGGGAGCCGCAACGGGAGTCGGCGG    383

BSNT_00757___    387 CGTGTTTACGCTGGCGGCAGACATTCCGGCAGTGCTTGGCTTATCACTAA    436
                     |||.||.|||||||||||||||||||||||..||||.|||.|.||..|||
RBAM_004720__    384 CGTATTCACGCTGGCGGCAGACATTCCGGCGATGCTCGGCCTGTCCTTAA    433

BSNT_00757___    437 AAACATTACAGGATATCGCAGTCGCATACGGCTATGACCCAAAGGAGAAA    486
                     |.||..|.|||||||||||.||.||.|||||||.|||.||.||.||.|||
RBAM_004720__    434 AGACGCTGCAGGATATCGCGGTTGCTTACGGCTTTGATCCGAAAGACAAA    483

BSNT_00757___    487 AAAGAACGCGTCTTCATTGTGAAATGCCTGCAGCTGACGTCGGCTGATGT    536
                     |||||||||||.||.||.||.||||..||.|||||..|.||...|||.||
RBAM_004720__    484 AAAGAACGCGTGTTTATCGTCAAATTGCTCCAGCTTGCATCCAGTGACGT    533

BSNT_00757___    537 TGTCGGCAAAAGATCGATTTTGCAGGAATTAAAACACTACGATCAA---G    583
                     ..||||.||||.|.||||..||||.||.|||...||.||.||||||   |
RBAM_004720__    534 CATCGGAAAAAAAGCGATCCTGCAAGATTTACGGCAATATGATCAAAACG    583

BSNT_00757___    584 ACCGTACATATAAGAATGTCGCTTCTCAAATCCAAGGCTGGCGAGAAGTC    633
                     ||||..|.|||.||...|||||.||.|||||||||||||||||.||||||
RBAM_004720__    584 ACCGCGCCTATCAGCGCGTCGCCTCGCAAATCCAAGGCTGGCGGGAAGTC    633

BSNT_00757___    634 GTTTTGGGCTATCGAGACACGTTTGGCTGGAAAAAACTTTTCCAGATGGT    683
                     ||||...||||.||.||.|||||.|.|..|||||||||..|.||.|||||
RBAM_004720__    634 GTTTACAGCTACCGCGATACGTTCGCCGCGAAAAAACTGCTGCAAATGGT    683

BSNT_00757___    684 GCCGGTTGCCGGAATGGTTTTTGGCGCCGCTGCCAATCGCTCAACATTA-    732
                     .||||..||.||.||..|.||.|||||..|.|||||.||.|||.|.||| 
RBAM_004720__    684 TCCGGCCGCAGGCATCATCTTCGGCGCGTCCGCCAACCGTTCAGCTTTAG    733

BSNT_00757___    733 AACGACATTACCGAGACAGGCATGATGCTGTACAAAAAGAGGCGCATTCT    782
                     ||.| |||..|.||.||||||||.|||||.||.|||||..|.||.|||||
RBAM_004720__    734 AAAG-CATCGCGGAAACAGGCATCATGCTCTATAAAAAACGCCGGATTCT    782

BSNT_00757___    783 TGAACGACTGAAAGAAACAGAACGAGAGATGGAATAG    819
                     ..||||..||||.||.||||||.||            
RBAM_004720__    783 AAAACGCATGAAGGATACAGAATGA------------    807


#---------------------------------------
#---------------------------------------
Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_00757 and RBAM_004720

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
