Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00774 and RBAM_004840

See Amino acid alignment / Visit BSNT_00774 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:33
# Commandline: needle
#    -asequence dna-align/BSNT_00774___ydbL.1.9828.seq
#    -bsequence dna-align/RBAM_004840___ydbL.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00774___ydbL-RBAM_004840___ydbL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00774___ydbL-RBAM_004840___ydbL.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00774___ydbL
# 2: RBAM_004840___ydbL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 342
# Identity:     279/342 (81.6%)
# Similarity:   279/342 (81.6%)
# Gaps:          12/342 ( 3.5%)
# Score: 1166.0
# 
#
#=======================================

BSNT_00774___      1 TTGAGGAACTTTATTACCGCTTTACCGATTGTATTGCTGCTTGGATTCTC     50
                     |||||.||.|||||||||||.|||||||||||.||..|||||||.||.||
RBAM_004840__      1 TTGAGAAATTTTATTACCGCATTACCGATTGTGTTATTGCTTGGTTTTTC     50

BSNT_00774___     51 ATTTGTGTCATTCATGTTTCAGTTTGAACATCTTGTTTATTTCAGGCTCG    100
                     .|||||||||||||||||.||.||.|||||||||||||||||||||||.|
RBAM_004840__     51 CTTTGTGTCATTCATGTTCCAATTCGAACATCTTGTTTATTTCAGGCTTG    100

BSNT_00774___    101 CGCTTGGGTTGTTTTCTCTCGTGGGACTGTACATGATATATAAAATGAAG    150
                     ||||.||.|||||||||...|||||.||||...|..||||||||||||||
RBAM_004840__    101 CGCTGGGTTTGTTTTCTACAGTGGGGCTGTTTCTCTTATATAAAATGAAG    150

BSNT_00774___    151 ACGGGCATCCGCTATTTTATCATCTATCTGTATGCCAGCTGGATTGTGTT    200
                     .||||..||||.|||||.||||||||.||||||||.||||||||.|||.|
RBAM_004840__    151 TCGGGATTCCGTTATTTCATCATCTACCTGTATGCAAGCTGGATCGTGCT    200

BSNT_00774___    201 GGCCGCAGTGACCGCTTTTGAAGAGCCGATTTTCTCAAGCTTTTTCTTTG    250
                     .||.|||||.|||||.|||||||||||||||||.||.|||||||||||||
RBAM_004840__    201 TGCGGCAGTTACCGCGTTTGAAGAGCCGATTTTTTCTAGCTTTTTCTTTG    250

BSNT_00774___    251 GCGGCCTGGTGATGACGATGGGTTACCTGACATATATGCTGATTTATCTC    300
                     ||||.||.|||||||||||||||||.||.|||||||||||||||||||||
RBAM_004840__    251 GCGGGCTTGTGATGACGATGGGTTATCTCACATATATGCTGATTTATCTC    300

BSNT_00774___    301 GGCATGAAACAAGACCG------GGATGCAAATCCTGTGTAA    336
                     ||..|.||.||.|||||      |||.|||      ||.|.|
RBAM_004840__    301 GGGCTTAAGCAGGACCGCGGCCCGGAAGCA------GTCTGA    336


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