Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05200 and RBAM_005490
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:41
# Commandline: needle
# -asequence dna-align/BSNT_05200___racX.1.9828.seq
# -bsequence dna-align/RBAM_005490___racX.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05200___racX-RBAM_005490___racX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05200___racX-RBAM_005490___racX.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05200___racX
# 2: RBAM_005490___racX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 758
# Identity: 446/758 (58.8%)
# Similarity: 446/758 (58.8%)
# Gaps: 151/758 (19.9%)
# Score: 1169.0
#
#
#=======================================
BSNT_05200___ 1 ATGATCGGAATATTAGCCGGAATGGGGCCGAAATCGACCTCACCGTTTAT 50
|||||.||||||.|.||.|||||||||||.|||||.||....||.|||.|
RBAM_005490__ 1 ATGATTGGAATACTGGCAGGAATGGGGCCAAAATCTACTGGGCCATTTGT 50
BSNT_05200___ 51 TGATAAGGTGATTGATTACTGTCAGAAGCTGTATGGGGCTTCAAACGATA 100
.||||||||..|.||..|.||.||.||..|.|||||.||...|.|.||.|
RBAM_005490__ 51 AGATAAGGTAGTAGACGAGTGCCAAAAAATATATGGAGCAATACATGACA 100
BSNT_05200___ 101 TTGACTACCCGCACATGATGATCTATTCATGCCCGACGCCCTTCTATGCA 150
|.||.|.|||.||.||||||||.|||||.||.|||||.||.||||||
RBAM_005490__ 101 TGGATTTCCCTCATATGATGATTTATTCTTGTCCGACTCCTTTCTAT--- 147
BSNT_05200___ 151 GAT-------CGTCCAATTGACCATGAC-GAGATGAAAAAAGCGATTATC 192
|| |.|| |.||.||| || ||.|||.||||.||.|||||.
RBAM_005490__ 148 -ATGAATAAACCTC---TCGATCAT-ACGGACATGGAAAAGGCAATTATT 192
BSNT_05200___ 193 GACGGAGCGGTAAAGCTCGAGAAAACAGACGTGGATTTCATTGCGCTGCC 242
||.||.||.||||||||.||.|||||.|..||.|||||.|||||..|.||
RBAM_005490__ 193 GAGGGGGCTGTAAAGCTTGAAAAAACGGGTGTTGATTTTATTGCAATCCC 242
BSNT_05200___ 243 TTGTAATACGGCGCATGTCTACT--------ATGAAGA----GATTCAGC 280
.||||||||.||.|||.||||.| ||.||.| ||||
RBAM_005490__ 243 ATGTAATACCGCACATATCTATTTTAATCAAATAAAAAAATCGATT---- 288
BSNT_05200___ 281 AGGCACTGTCGGTTCCTATGTTGCATATTGTTGAGGAAACGATAAAAGAG 330
||.||.|||.|..|..|.||.|||||.|||||.|||||..|.
RBAM_005490__ 289 --------TCAGTCCCTTTACTAAACATGGTTGATGAAACCATAAATAAA 330
BSNT_05200___ 331 ATTCC-----GCATCCTGCAAAAAAAGCGGTGGTTTTAGGAACAGAGCCA 375
||.|| || .||||||||||.|...||||||..||.|..||.
RBAM_005490__ 331 ATACCTAAAGGC-----TCAAAAAAAGCAGCTCTTTTAGCCACTGTTCCT 375
BSNT_05200___ 376 ACCATCCAATCCGCCATCTACCAAAAA--GTTCTGGAGGAAAATGGACA- 422
||..|.|||||.|..||.|..|||.|| ||| || |||
RBAM_005490__ 376 ACGGTTCAATCTGGAATATTTCAAGAAGCGTT---------AA---ACAG 413
BSNT_05200___ 423 AGAAG-------TTGTTCACA-------AGGACCATTGGCAGCAGGCTGT 458
||||| ||.||.||| || |||||| |..||.|
RBAM_005490__ 414 AGAAGGTTATGATTTTTTACATCAAGTTAG-----TTGGCA--AATCTAT 456
BSNT_05200___ 459 GAACCAGCTTATCGCCGCAATCA---AACAGCCAAATCAT-----ATGGA 500
| ||| |||| ||.|| |||..|| |.||
RBAM_005490__ 457 G----------TCG-----ATCACATAATAG--AAAAGATTAAACAAGG- 488
BSNT_05200___ 501 GTATTCACAATCATTGTGGCAG--ACGCTATATGAAGAAAT---CAGTCA 545
||| |||||.||.|||.| ||..|||||||.|||.| |.||
RBAM_005490__ 489 ----TCA-AATCAATGAGGCTGGTACATTATATGATGAATTACACCGT-- 531
BSNT_05200___ 546 GCAT--GCAGACA------------TCATCATTTCAGCCTGCACGGATTT 581
|.|| |||||.| |.|||||| ||.||.||||||||
RBAM_005490__ 532 GAATTAGCAGAAAAGGTTGATACGGTTATCATT---GCATGTACGGATTT 578
BSNT_05200___ 582 AAATGCGGTGTTAGATCATATTCAAAG-TGAGA---TTCCGATGATAGAT 627
||||..|||....|||||.| |||| .|.|| |.||..|| |.|||
RBAM_005490__ 579 AAATATGGTCACGGATCAAA---AAAGCAGCGAACTTACCTTTG-TTGAT 624
BSNT_05200___ 628 TCCTCTGCCTGTCTTGCAAAAAGCACTGTCAGCACATATCT-TGCTTATC 676
||.||.||.|||||.||..||..||.|||.|..|..|||.| |..|||.|
RBAM_005490__ 625 TCATCAGCTTGTCTCGCTCAAGCCATTGTAAATAAGTATGTATCATTAAC 674
BSNT_05200___ 677 AAAGCTAG 684
|||...|
RBAM_005490__ 675 AAAATAA- 681
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