Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03874 and RBAM_005600

See Amino acid alignment / Visit BSNT_03874 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:10
# Commandline: needle
#    -asequence dna-align/BSNT_03874___czcD.1.9828.seq
#    -bsequence dna-align/RBAM_005600___czcD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03874___czcD-RBAM_005600___czcD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03874___czcD-RBAM_005600___czcD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03874___czcD
# 2: RBAM_005600___czcD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 944
# Identity:     832/944 (88.1%)
# Similarity:   832/944 (88.1%)
# Gaps:          10/944 ( 1.1%)
# Score: 3699.5
# 
#
#=======================================

BSNT_03874___      1 ATGGGTCACAATCATAA------TGAAGGAGCAAATAAAAAGGTTTTATT     44
                     ||||||||||||||.||      ||..|||.|.|||||.|||||||||||
RBAM_005600__      1 ATGGGTCACAATCACAATCACGCTGGCGGATCCAATAAGAAGGTTTTATT     50

BSNT_03874___     45 GATCTCTTTTATCATGATTACAGGTTATATGATAATAGAAGCTATAGGTG     94
                     ||||||||||||||||||||||||||||||||||||||||||.|||||.|
RBAM_005600__     51 GATCTCTTTTATCATGATTACAGGTTATATGATAATAGAAGCGATAGGCG    100

BSNT_03874___     95 GATTTTTAACAAATAGTCTGGCGCTTTTATCTGATGCAGGCCATATGCTG    144
                     ||||||||||.||||||.|.||||||||.||.||||||||||||||||||
RBAM_005600__    101 GATTTTTAACCAATAGTTTAGCGCTTTTGTCAGATGCAGGCCATATGCTG    150

BSNT_03874___    145 AGTGATTCAATTTCATTAATGGTTGCCCTGATTGCTTTTACATTAGCTGA    194
                     |||||.||.||.||||||||||||||.|||||||||||||.|||.||.||
RBAM_005600__    151 AGTGACTCGATCTCATTAATGGTTGCTCTGATTGCTTTTAAATTGGCCGA    200

BSNT_03874___    195 AAAAAAGGCAAATCACAATAAGACATTCGGCTATAAACGATTTGAGATTC    244
                     |||||||||||.|||..||||.|||||||||||.||||||||||||||||
RBAM_005600__    201 AAAAAAGGCAAGTCATCATAAAACATTCGGCTACAAACGATTTGAGATTC    250

BSNT_03874___    245 TTGCAGCTGTGATAAACGGTGCTGCCTTAATTCTTATTTCTCTTTATATC    294
                     |.|||||||||||||||||||.|||.|||||..|.|||||||||||.|||
RBAM_005600__    251 TCGCAGCTGTGATAAACGGTGTTGCATTAATATTGATTTCTCTTTACATC    300

BSNT_03874___    295 ATTTATGAAGCAATCGAACGCTTCTCTAATCCACCAAAAGTAGCAACAAC    344
                     |||||||||||||||.||||.||||||.||||.||..|.|||||||||||
RBAM_005600__    301 ATTTATGAAGCAATCAAACGTTTCTCTCATCCGCCGGAGGTAGCAACAAC    350

BSNT_03874___    345 TGGAATGCTTACAATTAGTATCATCGGGTTAGTTGTGAATCTATTGGTCG    394
                     .||.|||||.||.||||||||.||||||||||.|||.|||.|||||||||
RBAM_005600__    351 CGGCATGCTGACGATTAGTATTATCGGGTTAGCTGTAAATATATTGGTCG    400

BSNT_03874___    395 CTTGGATTATGATGAGTGGCGGAGATACAAAGAATAATCTGAATATAAGA    444
                     |||||||||||.|||..||||||||||||||||||||.|||||.||||||
RBAM_005600__    401 CTTGGATTATGCTGAACGGCGGAGATACAAAGAATAACCTGAACATAAGA    450

BSNT_03874___    445 GGAGCTTATTTACATGTAATAAGCGATATGCTCGGCTCTGTAGGTGCCAT    494
                     ||.|||||.||||||||.|||||.||.||||||||.|||.||||||||||
RBAM_005600__    451 GGGGCTTACTTACATGTGATAAGTGACATGCTCGGATCTATAGGTGCCAT    500

BSNT_03874___    495 TTTAGCTGCCATCCTCATCATCTTCTTTGGATGGGGCTGGGCAGACCCAT    544
                     ..|.|||||.|||||.|||||||||||.||.|||.||||||||||.|||.
RBAM_005600__    501 ACTGGCTGCGATCCTTATCATCTTCTTCGGGTGGAGCTGGGCAGATCCAG    550

BSNT_03874___    545 TGGCTAGTATCATTGTGGCTATTCTTGTTCTAAGAAGCGGTTACAATGTG    594
                     .|||.|||.||||||||||||||||||||||.||||||||||||.|||||
RBAM_005600__    551 CGGCCAGTGTCATTGTGGCTATTCTTGTTCTGAGAAGCGGTTACCATGTG    600

BSNT_03874___    595 ACTAAAGATTCCATTCACATATTAATGGAAGGAACTCCAGAAAATATCGA    644
                     ||.|||||.|||||||||.|||||||||||||||||||.|.|||||||||
RBAM_005600__    601 ACGAAAGACTCCATTCACGTATTAATGGAAGGAACTCCGGGAAATATCGA    650

BSNT_03874___    645 TGTCTATGATATCATTCGTACAATTGAAGGGACAGAGGGAATTCAAAACA    694
                     ||||..|||.|||||||.|||||||||||.||||||.||||||||||.||
RBAM_005600__    651 TGTCACTGACATCATTCATACAATTGAAGAGACAGAAGGAATTCAAAGCA    700

BSNT_03874___    695 TTCATGATTTACACATATGGTCTATCACAAGCGGATTGAATGCTCTTTCT    744
                     ||||||||||.||||||||||||||||||||||||||||||||||||||.
RBAM_005600__    701 TTCATGATTTGCACATATGGTCTATCACAAGCGGATTGAATGCTCTTTCC    750

BSNT_03874___    745 TGCCATGCAGTTGTTGACGATCAACTGACCATTTCAGAAAGTGAAAATAT    794
                     |||||.|||||||||.|||||||||||||||||||.||||||||||.|||
RBAM_005600__    751 TGCCACGCAGTTGTTAACGATCAACTGACCATTTCTGAAAGTGAAAGTAT    800

BSNT_03874___    795 TTTACGCAAAATTGAACATGAACTT-GAGCATAAAGGCATTACGCACGTA    843
                     ||||||||||||||||||||||||| ||| |||||||||||||.||.|||
RBAM_005600__    801 TTTACGCAAAATTGAACATGAACTTGGAG-ATAAAGGCATTACACATGTA    849

BSNT_03874___    844 ACCATTCAAATGGAAACCGAAGCGCATAATCACGACAATGCGATCCTTTG    893
                     |||||||||||||||||.|.|||||||||||||||||||.||||.|||||
RBAM_005600__    850 ACCATTCAAATGGAAACAGCAGCGCATAATCACGACAATACGATTCTTTG    899

BSNT_03874___    894 TCAG-CCCAAAATGGAGAAGCCGCGTGACCACCATCACCATTAA    936
                     |||| ||||||.| |||||.|||||||||||.|||||.||||||
RBAM_005600__    900 TCAGTCCCAAACT-GAGAATCCGCGTGACCATCATCATCATTAA    942


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