Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00934 and RBAM_005940

See Amino acid alignment / Visit BSNT_00934 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:38
# Commandline: needle
#    -asequence dna-align/BSNT_00934___ydfJ.1.9828.seq
#    -bsequence dna-align/RBAM_005940___ydfJ.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00934___ydfJ-RBAM_005940___ydfJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00934___ydfJ-RBAM_005940___ydfJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00934___ydfJ
# 2: RBAM_005940___ydfJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2201
# Identity:    1567/2201 (71.2%)
# Similarity:  1567/2201 (71.2%)
# Gaps:         181/2201 ( 8.2%)
# Score: 5777.5
# 
#
#=======================================

BSNT_00934___      0 --------------------------------------------------      0
                                                                       
RBAM_005940__      1 ATGTCTGGTTTTTTATATAAATTAGGGGGATGGTCTGCCCGCAATCGATT     50

BSNT_00934___      0 --------------------------------------------------      0
                                                                       
RBAM_005940__     51 AAAAATGATCAGTGCGTGGCTCGTGATACTGATCGCTTCGGTTGTGATCG    100

BSNT_00934___      1 --------TTGAAACCAAGTTTTTCTGAGGATATGTCCATACCTGACACA     42
                             ||.|||||...||||||||||||||||||.||.||.||||||
RBAM_005940__    101 CCATCTCGTTAAAACCTGCTTTTTCTGAGGATATGTCAATTCCCGACACA    150

BSNT_00934___     43 CCTTCGGAAAAAGCGATGGATGTGATTCAAAAAGAATTTCCTCACGGTCC     92
                     |||||.|||||.|||||||||.|.|||||||||||||||.|..|.|||||
RBAM_005940__    151 CCTTCTGAAAAGGCGATGGATATCATTCAAAAAGAATTTTCAAAGGGTCC    200

BSNT_00934___     93 TGATAAAGGGAGCATACGGGTTATTTTCGGTGCTGGTGATGGGGAGAAAC    142
                     .||||||||.||||||||||||||||||||.||||..||.|||.|||||.
RBAM_005940__    201 CGATAAAGGAAGCATACGGGTTATTTTCGGAGCTGAAGACGGGAAGAAAT    250

BSNT_00934___    143 TTACTGGGAAGCCAGCAAAAAAAGCAATAGAAGATACGCTCAAAGAA-AT    191
                     |.||....||.||.|.||||.||||..|.|||||.|| .|.|||||| ||
RBAM_005940__    251 TGACGTCAAAACCGGAAAAACAAGCGGTTGAAGAGAC-ATTAAAGAAGAT    299

BSNT_00934___    192 CAGTAAA--GATGATTCTGTTGACTCGATTGCAAGTCCTTTTGTGACAGG    239
                     ||  |||  |||.||||.||.|..|||||||||||||||||||.||||||
RBAM_005940__    300 CA--AAACCGATCATTCAGTCGCTTCGATTGCAAGTCCTTTTGAGACAGG    347

BSNT_00934___    240 GACAATCGCGAAAGATGGCACAGTTGCCTATGCTGATATCAAGTATAAAT    289
                     .||.||..|.|||||.||..||||.||.|||||.|||.|...|||.|||.
RBAM_005940__    348 AACCATTTCTAAAGACGGATCAGTGGCGTATGCCGATGTGTCGTACAAAA    397

BSNT_00934___    290 CATCAGCAGATGATATAAAGGATTATTCTATCAAACACTTAAAAGACAGT    339
                     .|.|.||.|||||.||.|.||||...|||.|...|||..|.|||.|||||
RBAM_005940__    398 AAGCGGCGGATGACATTACGGATGCGTCTGTTTCACATATGAAACACAGT    447

BSNT_00934___    340 TTGAAACTG------GTTGATGATGAAGGATTGCAAACTGAGCTAAGCGG    383
                           |||      |..|..||..|.||..||||.||.|||||.|||||
RBAM_005940__    448 ------CTGTCCGCCGCCGGAGACAAGGGCCTGCAGACGGAGCTCAGCGG    491

BSNT_00934___    384 AGATGTACCGGGAGCCGAGATGGAGATAGGCAGTGTCTCTGAAATTGTCG    433
                     .|||||.|||||.||||...|.||.||.|||.||||.|||||||||||||
RBAM_005940__    492 CGATGTGCCGGGGGCCGGTGTTGAAATCGGCGGTGTATCTGAAATTGTCG    541

BSNT_00934___    434 GCATTATCTTGGCTTTTGTCGTTTTAGCCATTACATTGGGTTCTTTATTA    483
                     ||.||.|..||||.||.||||||.|.||||||||.||.|||||.|||.|.
RBAM_005940__    542 GCGTTGTGCTGGCATTCGTCGTTCTGGCCATTACGTTTGGTTCATTAGTC    591

BSNT_00934___    484 ATAGCAGGTTTGCCGATTTTAACTGCACTGATTGGTTTAGGTGTAAGTAT    533
                     ||.||.||..|.||||||.|.||.||.||||||||.|||||||||||.||
RBAM_005940__    592 ATCGCGGGGCTTCCGATTGTCACGGCCCTGATTGGGTTAGGTGTAAGCAT    641

BSNT_00934___    534 TGGACTGGTTTTGATTGGGACACAAGTATTT--GATATTGCTTCCGTCAG    581
                     .|..|||...||.|||||||||||..|.|||  ||||  ||.||.|||||
RBAM_005940__    642 CGCGCTGACGTTAATTGGGACACAGTTCTTTACGATA--GCCTCGGTCAG    689

BSNT_00934___    582 TCTTTCATTAGCCGGAATGATTGGCCTTGCTGTTGGTATTGATTATGCTT    631
                     |||.||||||.||||||||||.||.||.||.||.||.|||||||||||..
RBAM_005940__    690 TCTCTCATTATCCGGAATGATCGGACTGGCCGTCGGAATTGATTATGCGC    739

BSNT_00934___    632 TATTTATTTTTACGAAACACCGCCAGTTTTTAGGCGAAGGCATACAAAAG    681
                     |.|||||.||||||||.||.||.||||||||.||||||||..|||||||.
RBAM_005940__    740 TGTTTATCTTTACGAAGCATCGTCAGTTTTTGGGCGAAGGTGTACAAAAA    789

BSNT_00934___    682 AATGAATCAATTGCGAGAGCCGTGGGAACAGCGGGAAGCGCAGTCGTTTT    731
                     ||||||||.||.||||.|||||.||||||.||.||.|||||.||||||||
RBAM_005940__    790 AATGAATCGATCGCGAAAGCCGCGGGAACGGCAGGCAGCGCCGTCGTTTT    839

BSNT_00934___    732 TGCCGGACTTACTGTTATCGTTGCACTTTGCGGATTAACTGTCGTTAACA    781
                     |||.|||||.||.||.|||||.||.|||||||||||.|||||.||...||
RBAM_005940__    840 TGCGGGACTGACCGTGATCGTCGCGCTTTGCGGATTGACTGTTGTCGGCA    889

BSNT_00934___    782 TTCCTTTTATGTCTGCGATGGGGCTGACAGCAGGGCTTAGTGTACTGATG    831
                     |||||||.||||||||.||||||.||||.||.|..||.|||||.||||||
RBAM_005940__    890 TTCCTTTCATGTCTGCCATGGGGTTGACTGCGGCACTCAGTGTGCTGATG    939

BSNT_00934___    832 GCTGTTTTGGCTTCCATCACACTTGTGCCTGCGGTCTTATCGATTGCAGG    881
                     |||||.|||||.||..|.||.||.|||||||||||.||.||.||.||.||
RBAM_005940__    940 GCTGTATTGGCATCAGTAACGCTGGTGCCTGCGGTGTTGTCAATCGCGGG    989

BSNT_00934___    882 GAAGCGGATGATTCCGAAATCAAACAAGAAAATAGAAAAACAAAGCACTG    931
                     .||.||||||||||||||||||.|||||||.|.||||||..|||||.|.|
RBAM_005940__    990 AAAACGGATGATTCCGAAATCATACAAGAAGAAAGAAAAGAAAAGCGCCG   1039

BSNT_00934___    932 AAACAAATGTCTGGGGACGCTTTGTCACCAAAAATCCTATCATTCTAAGT    981
                     ..||.||||.||||||.|||||.||.||.||.||.|||||..|..||||.
RBAM_005940__   1040 GCACGAATGGCTGGGGGCGCTTCGTTACAAAGAAGCCTATTCTGTTAAGC   1089

BSNT_00934___    982 GTATGCAGCATTCTGATTTTGATCGTCATTAGTATCCCATCTATGCATTT   1031
                     .|.|.||||||..|..||||...||||||.|||.|.||..|.||||||||
RBAM_005940__   1090 ATTTTCAGCATCATTCTTTTAGCCGTCATCAGTCTGCCGGCCATGCATTT   1139

BSNT_00934___   1032 GGAACTGGGCTTGCCTGATGCTGGGATGAAAGCTAAGGATAATCCGGATC   1081
                     .||.|||||..||||||||||.||.||||||||.||.||.|..|||||||
RBAM_005940__   1140 AGAGCTGGGGCTGCCTGATGCGGGAATGAAAGCGAAAGACAGCCCGGATC   1189

BSNT_00934___   1082 GCCGGGCATATG-CCTTGCTTG-CCGAAGGCTTTGGAGAAGGATTTAATG   1129
                     ||||.||.|||| .|||  ||| |..||||.||.||.|||||.|||||.|
RBAM_005940__   1190 GCCGCGCCTATGATCTT--TTGTCTAAAGGATTCGGCGAAGGCTTTAACG   1237

BSNT_00934___   1130 GCCAATTAACAATCGTAGCGGATGCCACAAATGCTACA----GAAAATAA   1175
                     ||.|.||.|||||.||.||.|||||  .|||.|...||    |||.|.||
RBAM_005940__   1238 GCAAGTTGACAATTGTTGCCGATGC--AAAAGGGGTCAAGGGGAACAAAA   1285

BSNT_00934___   1176 GGCGGAGGC-TTTCGCAGATGCAGTGAAAGAAATAAAGGGCTTAGACCAT   1224
                     |  .||.|| |||| .||..||.|||||||||||.||||.|||..||.||
RBAM_005940__   1286 G--TGAAGCATTTC-AAGGCGCCGTGAAAGAAATGAAGGACTTGCACAAT   1332

BSNT_00934___   1225 GTAGCAAGTGTCACCCCTGCAATGCCTAATAAAGAAGGGAACTTTGCCAT   1274
                     ||.||.||.|||||.|||||.|||||.||..||.|||||.|||.||||||
RBAM_005940__   1333 GTGGCGAGCGTCACACCTGCCATGCCGAACGAAAAAGGGGACTATGCCAT   1382

BSNT_00934___   1275 CATTACGGTCGTTCCAGAAACAGGTCCAAATGATGTCACAACGAAAGATT   1324
                     ||||||||..||.||.|||||.||.||.||||||....||||||||||.|
RBAM_005940__   1383 CATTACGGCAGTGCCTGAAACCGGGCCGAATGATAAGGCAACGAAAGAGT   1432

BSNT_00934___   1325 TGGTACACGATGTACGCAGTTTATCAGATAAAAACGGAGTAGAT----TT   1370
                     |.||.||.|||.||||.|....||||||.||||||||    .||    .|
RBAM_005940__   1433 TAGTGCAGGATATACGGAAACGATCAGACAAAAACGG----CATCCGCCT   1478

BSNT_00934___   1371 GCTTGTTACTGGATCGACTGCAGTGAATATTGACATTTCAGATCGCCTCA   1420
                     |||.||.||.||.||.||.||.|||||.|||||.||||||||.||..|.|
RBAM_005940__   1479 GCTCGTCACCGGGTCAACCGCGGTGAACATTGATATTTCAGACCGGTTAA   1528

BSNT_00934___   1421 ATGATGCGATACCGGTGTTTGCTGTACTTATTGTGGGCTTTGCGTTTGTA   1470
                     |.|||||.||.||||..||.||..|.||.|||||.||.||||||||||||
RBAM_005940__   1529 ACGATGCCATTCCGGAATTCGCCATTCTCATTGTCGGGTTTGCGTTTGTA   1578

BSNT_00934___   1471 TTGCTGACCATCGTTTTCCGTTCGCTGCTTGTGCCGCTTGTTGCTGTTGC   1520
                     |||||||||.|.||||||||.|||||.||.||||||||||..|||||.|.
RBAM_005940__   1579 TTGCTGACCGTTGTTTTCCGCTCGCTTCTCGTGCCGCTTGCCGCTGTCGT   1628

BSNT_00934___   1521 AGGTTTCATGTTGACGATGACAGCCACTCTTGGGATTTGTGTATTTGTCT   1570
                     .||.||..||.||||||||||.||.||.||.||..|.|..|||||.|||.
RBAM_005940__   1629 CGGCTTTTTGCTGACGATGACTGCTACACTCGGCTTATCGGTATTCGTCC   1678

BSNT_00934___   1571 TGCAAGACGGGAATCTCATCGACTTTTTCAAAATACCTGAAAAAGGGCCG   1620
                     ||||.||.||.|||.|||.||.|||..|||..||.||.||||||||.|||
RBAM_005940__   1679 TGCAGGATGGAAATTTCACCGGCTTGCTCAGCATTCCGGAAAAAGGTCCG   1728

BSNT_00934___   1621 ATACTCGCGTTCCTGCCGATTTTATCGATTGGGATTCTGTTCGGGTTAGC   1670
                     ||.|||||.||||||||.|||||..||||.||.|||||.|||||..|.||
RBAM_005940__   1729 ATTCTCGCCTTCCTGCCTATTTTGGCGATCGGTATTCTTTTCGGACTGGC   1778

BSNT_00934___   1671 CATGGATTATCAAGTATTCCTTGTCAGCAGAATGCGTGAAGAATATGTAA   1720
                     .|||||||||||||||||||||||||||||||||.|.|||||||||||.|
RBAM_005940__   1779 GATGGATTATCAAGTATTCCTTGTCAGCAGAATGAGAGAAGAATATGTCA   1828

BSNT_00934___   1721 AAACAAAGAATCCAGTACAAGCCATTCAGGCTGGATTAAAACACAGTGGT   1770
                     |||||||.|||||.||||||||||||||.||.|||||.|||||.||.||.
RBAM_005940__   1829 AAACAAAAAATCCGGTACAAGCCATTCATGCCGGATTGAAACATAGCGGA   1878

BSNT_00934___   1771 CCTGTTGTTACAGCAGCCGGCTTGATCATGATCTTCGTTTTTGCAGGATT   1820
                     |||||.||.|||||.||.||..||||||||||.|||||.|||||.|||||
RBAM_005940__   1879 CCTGTCGTAACAGCGGCGGGACTGATCATGATTTTCGTCTTTGCGGGATT   1928

BSNT_00934___   1821 TATCTTTGCAGGCGAAGCTTCTATTAAAGCCAACGGATTAGCACTTTCCT   1870
                     .||||||||.||.||||||.|.||.|||.|||..||.||.|||.|..|||
RBAM_005940__   1929 CATCTTTGCGGGAGAAGCTACGATCAAATCCATGGGCTTGGCAATGACCT   1978

BSNT_00934___   1871 TTGGTGTGCTCTTTGATGCCTTTATTGTAAGAATGACACTGATTCCAAGT   1920
                     |.||||||||.||||||||.||.||||||||||||||..|.|||||.|||
RBAM_005940__   1979 TCGGTGTGCTTTTTGATGCGTTCATTGTAAGAATGACCATTATTCCGAGT   2028

BSNT_00934___   1921 GTCATGAAGCTGATGGGGAATGCAGCCTGGTATTTGCCGAAATGGTTAGA   1970
                     |||||||||||||||||..||||.||||||||.||||||||.|||.|.||
RBAM_005940__   2029 GTCATGAAGCTGATGGGACATGCGGCCTGGTACTTGCCGAAGTGGCTGGA   2078

BSNT_00934___   1971 CAAGATTATTCCGAACGTGGATATAGAAGGGCATCAACTGACA-AAGGAA   2019
                     .||.||.|||||||||||||||||.|||||.|||.|.|||||| ||||.|
RBAM_005940__   2079 TAAAATCATTCCGAACGTGGATATCGAAGGCCATAAGCTGACACAAGGCA   2128

BSNT_00934___   2020 ATACAGCC--AGAAATAGATCATGAACAA-AAGAAACAAATCAGTGTGTA   2066
                     |.||| ||  |||||     |..|||.|| ||                  
RBAM_005940__   2129 AAACA-CCGGAGAAA-----CCGGAAGAATAA------------------   2154

BSNT_00934___   2067 A   2067
                      
RBAM_005940__   2154 -   2154


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