Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03867 and RBAM_006040
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:10
# Commandline: needle
# -asequence dna-align/BSNT_03867___bltD.1.9828.seq
# -bsequence dna-align/RBAM_006040___bltD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03867___bltD-RBAM_006040___bltD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03867___bltD-RBAM_006040___bltD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03867___bltD
# 2: RBAM_006040___bltD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 470
# Identity: 326/470 (69.4%)
# Similarity: 326/470 (69.4%)
# Gaps: 22/470 ( 4.7%)
# Score: 1036.0
#
#
#=======================================
BSNT_03867___ 1 ATGAGTATAAACATAAAAGCAGTAACTGATGATAATCGTGCTGCAATTCT 50
||||..||..|.||.|.|.||||.||.||.||.||.|||||.|..||.||
RBAM_006040__ 1 ATGACGATTGAAATCAGAACAGTCACGGAAGAAAACCGTGCCGATATACT 50
BSNT_03867___ 51 TGATCTGCATGT------CAGCCAGAATCAATTATCATATATTGAATC-- 92
.|..||.||||| .|||||||.| ||||.|||||||.|
RBAM_006040__ 51 GGCGCTTCATGTAAGGGAAAGCCAGACT------TCATTTATTGAAACCG 94
BSNT_03867___ 93 TACAAAAGTATGTTTAGAGGATGCAAAAGAATGTCACTATTATAAACCTG 142
|..||.|| ||.|||.|.|||||..|.||.||.|...|||||.|.||.|
RBAM_006040__ 95 TGGAAGAG--TGCTTACAAGATGCTGAGGATTGCCGGCATTATCAGCCGG 142
BSNT_03867___ 143 TCGGGCTTTACTATGAA-GGAGATCTAGTCGGTTTTGCAATGTATGGATT 191
.|||.||||| |.|.|| ||.||..|.|||||.|||||.|||||.||||.
RBAM_006040__ 143 CCGGTCTTTA-TGTTAACGGGGAATTGGTCGGCTTTGCTATGTACGGATG 191
BSNT_03867___ 192 GTTTCCCGAGTATGATGAAGATAATAAAAACGGACGAGTCTGGCTTGACC 241
||||||.||.||||||||.||.|||.|||||||..||||.||||||||||
RBAM_006040__ 192 GTTTCCGGAATATGATGAGGAAAATGAAAACGGCAGAGTATGGCTTGACC 241
BSNT_03867___ 242 GATTTTTTATTGACAAACACTACCAGGGAAAAGGATTAGGGAAGAAAATG 291
|.|||||||||||..|||.|||.||||||...|||||.||.|||....||
RBAM_006040__ 242 GTTTTTTTATTGATGAACGCTATCAGGGACGGGGATTGGGCAAGCTGTTG 291
BSNT_03867___ 292 CTTAAAGCCCTCATTCAGCACCTTGCT-GAGCTATATAAATGCAAGA-GA 339
|||.|.|||||.||.|..||.||.|.| || .|||||.|.||| ||| |.
RBAM_006040__ 292 CTTGATGCCCTTATCCGCCATCTCGTTCGA-ATATATGATTGC-AGACGG 339
BSNT_03867___ 340 ATTTATTTAAGTATATTTGAAAATAATATTCATGCTATACGCCTTTATCA 389
|||||||||||..|.||||||.||||..|.||.||..|.||.||||||||
RBAM_006040__ 340 ATTTATTTAAGCCTGTTTGAAGATAACGTCCACGCATTGCGGCTTTATCA 389
BSNT_03867___ 390 AAGGTTTGGTTTTCAATTTAATGGTGAACTCGACTTTAATGGTGAGAAGG 439
||..||.||.||...|||.|||||.||.||.||||..||.||.||.||.|
RBAM_006040__ 390 AAAATTCGGCTTCTTATTCAATGGAGAGCTGGACTCAAACGGGGAAAAAG 439
BSNT_03867___ 440 TAATGGTAAAAGAGCTATAG 459
|.|||||.||||||||.||.
RBAM_006040__ 440 TGATGGTGAAAGAGCTGTAA 459
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