Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00997 and RBAM_006150
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:40
# Commandline: needle
# -asequence dna-align/BSNT_00997___ydhK.1.9828.seq
# -bsequence dna-align/RBAM_006150___ydhK.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00997___ydhK-RBAM_006150___ydhK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00997___ydhK-RBAM_006150___ydhK.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00997___ydhK
# 2: RBAM_006150___ydhK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 756
# Identity: 422/756 (55.8%)
# Similarity: 422/756 (55.8%)
# Gaps: 195/756 (25.8%)
# Score: 1272.0
#
#
#=======================================
BSNT_00997___ 1 ATGTTTTCATTGTCTGCGGGCAAAAGTTACAGGAAAAAAATGAA----GC 46
|..||||||.|| ||
RBAM_006150__ 1 --------------------------------GTGAAAAATCAAAAAGGC 18
BSNT_00997___ 47 AAAGGAG-------AATGAATATGAAAATCTCTAAATATGCACTGGGAAT 89
||||||| ||||||...||.| |||..|.| ||
RBAM_006150__ 19 AAAGGAGTTCTTGAAATGAAAGCGAGA----CTATTTTT---------AT 55
BSNT_00997___ 90 TCTG-ATGTT-------ATC-----TCTAGTTTTTGTTTTATCAGCATGC 126
||.| ||||| ||| |||.|...||| |.|.||||
RBAM_006150__ 56 TCAGCATGTTTCTCCTGATCCCCGTTCTGGCGCTTG------CCGGATGC 99
BSNT_00997___ 127 ----GGCAATAACAACAGTACGAA---AGAAAGC-ACACATGACAATCAT 168
|.|||| |..|||.|.||| |.||||| | |.|||||..|.
RBAM_006150__ 100 AACAGCCAAT--CTTCAGGAGGAAGCGAAAAAGCGA---AAGACAAAGAA 144
BSNT_00997___ 169 TCAGACTCCTCAACACATGAAGAGATGGACCATTCCGGATCAGCTGACGT 218
.|..||| |.||.|||||.|||.|.||.||.||.|||.|.||.||
RBAM_006150__ 145 ACGCACT------CTCACGAAGACATGAATCACTCAGGTTCATCCGAGGT 188
BSNT_00997___ 219 TCCAGAGGGATTACAGGAATCTAAAAATCCGAAATACAAAGTAGGCAGCC 268
.||..|.||.|||.||.|..|..|||||||||..||.||.||.|||||..
RBAM_006150__ 189 GCCGAAAGGTTTAAAGAAGGCAGAAAATCCGACTTATAAGGTCGGCAGTG 238
BSNT_00997___ 269 AAGTAATCATCAATA-CTTCTCATATGAAAGGCATGAAAGGTGCTGAAGC 317
|.||.||.|| ..|| |||||||||||||||||||||||..|||..|||.
RBAM_006150__ 239 ACGTCATGAT-TTTAGCTTCTCATATGAAAGGCATGAAAAATGCGCAAGG 287
BSNT_00997___ 318 TACGGTAACAGGCGCCTATGATACAACGGCGTATGTTGTTTCTTATACTC 367
.||.||||.|||.||.|||||||||||||..||...|||.|||||.||||
RBAM_006150__ 288 AACCGTAAAAGGTGCTTATGATACAACGGTTTACAGTGTATCTTACACTC 337
BSNT_00997___ 368 C-GACTAATGGG-GGACAGCGTGTGGATCATCACAAATGGGTGATCCAAG 415
| || ||.||| |||.||||.||.||..||||.||||||||.||.||.|
RBAM_006150__ 338 CGGA--AACGGGAGGAAAGCGCGTTGAAGATCATAAATGGGTCATTCAGG 385
BSNT_00997___ 416 AAGAAATCAAAGATGCCGGAGATAAAACGTTACAACCCGGAGATCAG--- 462
||||..|.||.|..|||||.||||.|||||||.|.||.||.|||.||
RBAM_006150__ 386 AAGAGCTAAAGGGCGCCGGTGATAGAACGTTAAATCCGGGTGATAAGGCC 435
BSNT_00997___ 463 GTGATTTTAGAGGCTTCTCATATGAAAGGCATGAAAGGAGCAACAGCCGA 512
|||||| |||||.||.|||||||||||||||||.||.||...|||||.
RBAM_006150__ 436 GTGATT---GAGGCATCCCATATGAAAGGCATGAAGGGCGCCGAAGCCGT 482
BSNT_00997___ 513 GATCGATTCCGCGGAAAAAACAACTGTATACATGGTTGACTACACATCGA 562
.||.|||||.||..||||.|||||.||.||.|||||.|||||.||..|||
RBAM_006150__ 483 TATTGATTCAGCCAAAAAGACAACCGTTTATATGGTCGACTATACGCCGA 532
BSNT_00997___ 563 C-AACGAGCGGCGAAAAAGTGAAAAACCACAAATGGGTCACAGAAGATGA 611
| .||| |||||.|||||||.|..||.||.|||.||||.||||||||.||
RBAM_006150__ 533 CTGACG-GCGGCCAAAAAGTAACCAATCATAAAGGGGTGACAGAAGACGA 581
BSNT_00997___ 612 GCT---TTCAGCTAAAT----------CATAA------------------ 630
||| |.|.||.|||| ||.||
RBAM_006150__ 582 GCTTGCTGCCGCAAAATACAAAGGCCGCAAAAGCCGAAGGAACTCCTTTG 631
BSNT_00997___ 630 -------------------------------------------------- 630
RBAM_006150__ 632 GCTTTTATGCGGTCTCACATTTATGCGGATTTTGTTTTCCAGGCAGGTCT 681
BSNT_00997___ 630 ------ 630
RBAM_006150__ 682 CGTTAA 687
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