Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06219 and RBAM_006190
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:40
# Commandline: needle
# -asequence dna-align/BSNT_06219___yycB.1.9828.seq
# -bsequence dna-align/RBAM_006190___yycB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06219___yycB-RBAM_006190___yycB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06219___yycB-RBAM_006190___yycB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06219___yycB
# 2: RBAM_006190___yycB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1406
# Identity: 763/1406 (54.3%)
# Similarity: 763/1406 (54.3%)
# Gaps: 388/1406 (27.6%)
# Score: 1816.0
#
#
#=======================================
BSNT_06219___ 1 -------TT---GCC--ACATCCACAT---------AA-------TAAAA 22
|| |.| |||| ||.|| || |||||
RBAM_006190__ 1 ATGAAAATTAAAGACGAACAT-CAAATTCTGCAAGCAAGTCAGCGTAAAA 49
BSNT_06219___ 23 AAATCCAATCATTTTGGCTGATCACCGGCATTATCTTTAT---CGCCTTT 69
| |.|.||.|| ||||.|||.|||..|.||.||.|| .|||
RBAM_006190__ 50 A-----ACTGATATT-GCTGGTCATCGGAGTCATATTGATAGGGGCC--- 90
BSNT_06219___ 70 AA-CTTACGGC-CCGCGATCACTTCAGTCGGTCCGGTCATCAGCTCTATC 117
|| ||.|..|| ||.| |.||.||.|||||.|||.||.|...|||.||.
RBAM_006190__ 91 AACCTCAGAGCGCCTC--TGACATCGGTCGGGCCGCTCGTTTCCTCAATT 138
BSNT_06219___ 118 CGGG-CAGAACTGCACATGTCCAATGGGGCAGCCGG-----TTTTTTGAC 161
|||| ||| .||...||||.||||||.|||.||||| || ||
RBAM_006190__ 139 CGGGACAG-CCTCGGCATGACCAATGCGGCTGCCGGCACCATT-----AC 182
BSNT_06219___ 162 CGCACTGCCGCTGCTTT--CGTTTGCAGTTCTTTCTCCGCTTGCACC--T 207
..||.||||||| ||| |.||||||..|||.||.|||.|||..|| |
RBAM_006190__ 183 GACAGTGCCGCT--TTTGGCCTTTGCATGTCTGTCGCCGTTTGTTCCTTT 230
BSNT_06219___ 208 AAGCTTG-GACAGCGCCTCGGAAATGAGCGAACTTTATGGCTAGGTCTCG 256
| ||| ..|.||||.|||| ||.|||..|| |
RBAM_006190__ 231 A---TTGTCCCGGCGCTTCGG----GACCGAGATT--------------G 259
BSNT_06219___ 257 TGATACTGCTTATCGGCGTTTTGACTCGTTCT----ACCGG--CTATACT 300
||.||||| |.||| .|.|.|.||.|| .|||| ||.|.||
RBAM_006190__ 260 TGTTACTG-TCATC------ATTAATTGTCCTGACAGCCGGAACTCTGCT 302
BSNT_06219___ 301 GC-------------------CGCTTTGTTTTTCGGAACGGCACTTATCG 331
|| |.||.|.|||||||||||| |||
RBAM_006190__ 303 GCGCTCCATCGCCGGAATCGGCACTCTCTTTTTCGGAACG------ATC- 345
BSNT_06219___ 332 GC-GTCGGGATTG-CGATTG------GTAACGTACTTTTGCCAAGCTTAA 373
| ||.||||||| ||||.| |.||.||.||..||||.||..|.|
RBAM_006190__ 346 -CTGTTGGGATTGTCGATCGCCGTATGCAATGTCCTGCTGCCGAGTCTCA 394
BSNT_06219___ 374 TCAAACATAAATACCCTGAAAAGCCAGGGATCGTGATCAGCCTGTATACG 423
|.||||||||.|..||.|.|||...|||.|||.|||.|.||.|.||..||
RBAM_006190__ 395 TTAAACATAAGTTTCCCGGAAATTTAGGCATCATGACCGGCGTCTACTCG 444
BSNT_06219___ 424 ACATCAATGAATATATTCGCAGCTTTAGCATCGGGTGTCAGCGTTC---- 469
...||.||||||.|.|.||..||..|.|||||.||..|||||||.|
RBAM_006190__ 445 GTTTCTATGAATCTGTGCGGCGCGATTGCATCCGGCATCAGCGTGCCGAT 494
BSNT_06219___ 470 -----CTTTAGCGACCCAGATGGAT--GGCGGATGGAAACAGGC-CTTTC 511
|||.|||| ||.| ||| ||||| |||| |..||
RBAM_006190__ 495 CGCCTCTTCAGCG--------GGGTTAGGC---TGGAA--AGGCGCGCTC 531
BSNT_06219___ 512 TCTTATGGGGC----GGGCTGGCTTTACTTGCATTGC-----TAATCTGG 552
||| |||||..|.||.|||.|||||| |.||.|||
RBAM_006190__ 532 --------GGCTGCTGGGCTATCCTTTCTTTCATTGCGTTTGTCATGTGG 573
BSNT_06219___ 553 ATACCTCAGCTGCG-----------------------CCACCGGGATACG 579
||.||.||..|||| |.||.||||
RBAM_006190__ 574 ATTCCGCAAATGCGAGGACGCGAACTGCCCGTCCGCACGACTGGGA---- 619
BSNT_06219___ 580 GCAAAC-CAGACAATGAA---------GCTGCAATCCAGTTCCATTTGGG 619
||||| .|||.|| ||| |||||..|| ||| |
RBAM_006190__ 620 -CAAACGGAGAGAA-GAAAAGCAGTCTGCTGCGGTC----TCC------G 657
BSNT_06219___ 620 CTTCCAAAATGGCATGGTATGTCACCATCTTTATGGGCCTGCAATCGTTT 669
||| ||.|||.|.||.||.||.||.|||||.||||||||..||
RBAM_006190__ 658 CTT--------GCTTGGAAGGTGACGATGTTCATGGGGCTGCAATCCCTT 699
BSNT_06219___ 670 TTATTTTACAGCAGCATCGCTTGGTTTCCTGAAATTCTCCGTTCA-CACG 718
.|.|||||||.|..||||||||||.|.||.||||||| |||| ||
RBAM_006190__ 700 ATTTTTTACACCGTCATCGCTTGGCTGCCGGAAATTC----TTCAGCA-- 743
BSNT_06219___ 719 GGATTGATACGGC------AACAGCCGGATGGATGGTATCACTCATGCAA 762
|.||.||..|.|| || .||.|||||||||.|.|||.|.||||||
RBAM_006190__ 744 GAATGGACTCAGCTCAAGTAA-GGCGGGATGGATGCTTTCATTAATGCAA 792
BSNT_06219___ 763 TTTGCGAGT-CTGCC--TTCCACTTTT------CTGACACCAGTTTTAGC 803
||..| ||| ||||| || |||||| |.|| |.||
RBAM_006190__ 793 TTCTC-AGTCCTGCCGATT--ACTTTTATCGTGCCGA---------TCGC 830
BSNT_06219___ 804 TGACCG----TGTGAAACAGCAGCGCGGTATCGTTGCGGCGCT---GGCC 846
|| ||| ..|||||.|.|||||||...|| ||.|..|| |||.
RBAM_006190__ 831 TG-CCGCTAAAATGAAAAATCAGCGCGCACTC---GCCGGACTGACGGCT 876
BSNT_06219___ 847 TCAGTTTATCTGATCGGCCTTTGCGG-ATTATTAGCGGGCGGAAGCCATA 895
|.|.|||..||.||||||.||..||| .||.|| ..||||||||
RBAM_006190__ 877 TTATTTTTCCTTATCGGCATTGCCGGCGTTCTT----TTCGGAAGCC--- 919
BSNT_06219___ 896 CATTGCT-----TGCCATCTGGATGATCATTATCGGTAT--CGGGCAAGG 938
..||| |.|..|.|||.|.||..|.|||||.|| |||| |||
RBAM_006190__ 920 --CGGCTCTCACTCCGCTATGGGTCATTTTAATCGGAATTGCGGG--AGG 965
BSNT_06219___ 939 CTCCAGCATTAGTCTGGCGCTCA-CTT-----TGATTGGTCT-------- 974
|| || |||.||| ||| ||| ||.|||
RBAM_006190__ 966 CT---------GT---GCGTTCAGCTTGGCGATGA-TGTTCTTCAGCCTG 1002
BSNT_06219___ 975 ------CCGCAGTGAAAATGCCCAACAGGCCGCTGCGCTGTCAGGCATGT 1018
|.|| |||..||..|.|||||.|||||.||.||||||.
RBAM_006190__ 1003 CGGACCCGGC-------ATGTTCATGAAGCCGCGGCGCTTTCCGGCATGG 1045
BSNT_06219___ 1019 CTCAGTCATTCGGCTACCTGCTGGCAGCAGTCGGGCCAATCTTTGTCGGC 1068
|.|||||||||||.||||||||.||.||..|||||||..||.|..||||.
RBAM_006190__ 1046 CCCAGTCATTCGGATACCTGCTTGCCGCGTTCGGGCCGCTCGTATTCGGT 1095
BSNT_06219___ 1069 TATCTCTTTGACCAGACGCATTCATGGACGATGCCGATAGTGCTTCTCAT 1118
|..||...||||...|||||....||||||.|.|||.||.|..|.||.||
RBAM_006190__ 1096 TTGCTGCATGACATCACGCACGGCTGGACGGTTCCGTTATTCATGCTGAT 1145
BSNT_06219___ 1119 TGCTGCC------CTGA---------TCGTAATGGGAGCAGCTGGACAGA 1153
.||.|.| |||| |||.|.|.|||||.| ||
RBAM_006190__ 1146 CGCAGTCTCCGTTCTGATTTTTATTTTCGGAGTCGGAGCGG-------GA 1188
BSNT_06219___ 1154 GAGCCGGACGAGATCGATACATTTTTCAGTCAGAAAAACAAAGAAATTCA 1203
.|..||||..||||| |||| ||
RBAM_006190__ 1189 AAAGCGGAACAGATC-------------------AAAA----------CA 1209
BSNT_06219___ 1204 GCATAA 1209
||||||
RBAM_006190__ 1210 GCATAA 1215
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