Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05207 and RBAM_006230

See Amino acid alignment / Visit BSNT_05207 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:42
# Commandline: needle
#    -asequence dna-align/BSNT_05207___yveA.1.9828.seq
#    -bsequence dna-align/RBAM_006230___yveA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05207___yveA-RBAM_006230___yveA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05207___yveA-RBAM_006230___yveA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05207___yveA
# 2: RBAM_006230___yveA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1574
# Identity:    1220/1574 (77.5%)
# Similarity:  1220/1574 (77.5%)
# Gaps:          22/1574 ( 1.4%)
# Score: 4704.0
# 
#
#=======================================

BSNT_05207___      1 ATGTCTAAACAAGGAAATTTTCAAAAATCAATGTCGCTGTTTGATCTGAT     50
                     ||||||||.||||||||.||.||.|||.|.|||||.||.||||||||.||
RBAM_006230__      1 ATGTCTAAGCAAGGAAACTTCCAGAAAACTATGTCACTTTTTGATCTTAT     50

BSNT_05207___     51 TTTGATTGGGATGGGAGCCATCTTTGGATCAGCGTGGCTGTTCGCTGTCA    100
                     |||.||.||.|||||||||||.||.||.||.||.||||||||.||.||||
RBAM_006230__     51 TTTAATCGGCATGGGAGCCATATTCGGTTCGGCATGGCTGTTTGCCGTCA    100

BSNT_05207___    101 GTAATGTCGCTTCAAAAGCAGGGCCCTCCGGCGCTTTTTCCTGGATCCTC    150
                     ||||.|||||.||.|||||.||.||.||.||||.||||||||||.|..||
RBAM_006230__    101 GTAACGTCGCCTCTAAAGCGGGTCCATCAGGCGTTTTTTCCTGGCTGATC    150

BSNT_05207___    151 GGAGGAGCCATTATTTTGTTAATCGGGCTCGTATATGCAGAGCTCGGAGC    200
                     ||.||.|..||.||.||.||.|||||..|.||.|||||.||.||.||.||
RBAM_006230__    151 GGCGGGGGAATCATCTTATTGATCGGCTTGGTTTATGCGGAACTGGGCGC    200

BSNT_05207___    201 CGCTCTGCCCCGTACCGGAGGCATCATTCGATACCCCGTTTATTCACATG    250
                     |||.|||||.||.|||||.||.||.||.||.||.|||||.||||||||.|
RBAM_006230__    201 CGCGCTGCCGCGGACCGGGGGAATTATCCGGTATCCCGTATATTCACACG    250

BSNT_05207___    251 GCCACCTTGTCGGCTACTTAATTTCGTTTGTCACGATTGTCGCTTATACA    300
                     |.|||||.|||||.||.||||||||.||||||||.|||||.||.||.||.
RBAM_006230__    251 GACACCTCGTCGGATATTTAATTTCCTTTGTCACCATTGTGGCATACACG    300

BSNT_05207___    301 AGCTTGATTTCAATTGAAGTGACAGCTGTGCGCCAGTATGTGGCCTATTG    350
                     |||.|.|||||.||.|||||.||.||.||.|||||.||.|||||.|||||
RBAM_006230__    301 AGCCTTATTTCTATAGAAGTCACGGCAGTCCGCCAATACGTGGCGTATTG    350

BSNT_05207___    351 GTTTCCCGGCCTGACCATTAAAGGGTCTGATTCGCCGACCATTTCCGGCT    400
                     |||||||||..|||||.|.|||||.||||||||.|||||.|||.||||.|
RBAM_006230__    351 GTTTCCCGGTTTGACCGTAAAAGGCTCTGATTCTCCGACAATTGCCGGGT    400

BSNT_05207___    401 GGATCTTGCAATTTGCCCTATTATGCTTGTTTTTCCTGCTGAATTATTGG    450
                     ||||.|||||||||||.||..|.|||.||||.|||||.||.|||||.|||
RBAM_006230__    401 GGATATTGCAATTTGCGCTGCTCTGCCTGTTCTTCCTCCTCAATTACTGG    450

BSNT_05207___    451 AGCGTCAAAACCTTCGCTAAGGCGAATTTCATCATATCGATTTTTAAATA    500
                     ||.|||||||||||.||.||.||.||.|||||.||.||||||||||||||
RBAM_006230__    451 AGTGTCAAAACCTTTGCGAAAGCAAACTTCATTATTTCGATTTTTAAATA    500

BSNT_05207___    501 TATTGTGCCGATTACCATCATTATTGTGCTGATCTTTCATTTTCAGCCGG    550
                     |.|.||.||||||||..|.|||.|.||.|||||.|||||||||||.||||
RBAM_006230__    501 TGTCGTACCGATTACGGTAATTGTGGTACTGATTTTTCATTTTCACCCGG    550

BSNT_05207___    551 AGAATTTATCCGTTCAAGGATTTGCACCGTTTGGATTTACAGGTATTCAG    600
                     ..|||.|..|||||||.|||||.||.||.|||||.||.||.||.||||||
RBAM_006230__    551 GCAATATGACCGTTCACGGATTCGCGCCTTTTGGTTTCACCGGAATTCAG    600

BSNT_05207___    601 GCTGCCATCTCGACAGGCGGCGTCATGTTTGCGTATCTCGGCCTGCACCC    650
                     ||.||.||.||.||||||||||||||||||||.||.||.||.|||||.||
RBAM_006230__    601 GCCGCGATTTCCACAGGCGGCGTCATGTTTGCATACCTTGGGCTGCATCC    650

BSNT_05207___    651 GATTGTATCTGTAGCAGGTGAAGTCCAAAATCCAAAACGCAATATCCCGA    700
                     ||||||..||||.||..|||||||.||.|||||.||.||.||.||.||||
RBAM_006230__    651 GATTGTGGCTGTCGCGAGTGAAGTGCAGAATCCGAAGCGGAACATTCCGA    700

BSNT_05207___    701 TCGCTTTAATCATTTGCATCATCGTTTCAACCATCATTTATACTGTTTTG    750
                     ||||.||.||..|.||.||.||||||||.||.||.|||||.||.||..||
RBAM_006230__    701 TCGCATTGATTGTCTGTATTATCGTTTCTACTATTATTTACACCGTGCTG    750

BSNT_05207___    751 CAGGTCACCTTTATTGGTGCAATCCCGACAGAAACACTGAAACATGGCTG    800
                     |||.||||.|||||.||.||.||||||.|.||.||.|||||.||.||.||
RBAM_006230__    751 CAGCTCACTTTTATCGGGGCGATCCCGGCGGATACCCTGAAGCACGGATG    800

BSNT_05207___    801 GCCGGCAATTGGCCGG----GAGTTCTCATTGCCGTTTAAGGATATTGCG    846
                     ||||||.||    |||    ||.|||||..|.|||||.||.|||||.||.
RBAM_006230__    801 GCCGGCTAT----CGGGACTGAATTCTCCCTTCCGTTCAAAGATATCGCC    846

BSNT_05207___    847 GTCATGCTCGGGTTAGGCTGGCTTGCAACGCTTGTCATTTTAGACGCCAT    896
                     ||..|||||||.||.||.|||||.||.||..|.|||||||||||.||.||
RBAM_006230__    847 GTTTTGCTCGGTTTGGGGTGGCTGGCGACATTGGTCATTTTAGATGCGAT    896

BSNT_05207___    897 TCTGTCTCCCGGAGGAAACGGGAATATCTTTATGAATACGACATCCCGCC    946
                     |.|.||.||.||.||.|||||.||||||||||||||||||||.||.||.|
RBAM_006230__    897 TTTATCACCGGGCGGTAACGGAAATATCTTTATGAATACGACTTCACGTC    946

BSNT_05207___    947 TTGTTTACGCCTGGGCGCGTAACGGCACATTATTTGGCATATTCTCAAAG    996
                     |.||.||.||||||||..|.|||||.||||||||..||||.||.||.||.
RBAM_006230__    947 TCGTCTATGCCTGGGCCAGAAACGGAACATTATTCAGCATTTTTTCTAAA    996

BSNT_05207___    997 GTCAATAAAGATACGGGGACACCCCGCGCTTCGCTTTGGCTTTCGTTTGC   1046
                     |||||||||||.||.||||||||.||.||.||.||||||||||||||.|.
RBAM_006230__    997 GTCAATAAAGAAACCGGGACACCGCGTGCCTCCCTTTGGCTTTCGTTCGG   1046

BSNT_05207___   1047 CCTGTCCATTTTCTGGACACTTCCCTTTCCTTCGTGGAATGCGCTCGTCA   1096
                     .|||.|..||||.|||||.|||||.||.|||||.|||||.||.||.||||
RBAM_006230__   1047 TCTGGCTGTTTTTTGGACGCTTCCGTTCCCTTCTTGGAACGCTCTTGTCA   1096

BSNT_05207___   1097 ATGTCTGTTCAGTCGCGCTCATTCTTTCATATGCGATTGCACCCATTTCT   1146
                     |.||.||.||.|||||..|.|||||.||.|||||||||||.||.||||||
RBAM_006230__   1097 ACGTATGCTCCGTCGCATTGATTCTGTCTTATGCGATTGCGCCGATTTCT   1146

BSNT_05207___   1147 TCAGCTGCGCTGAGGGTCAACGCGAAGGACTTAAACAGGCCGTTTTATTT   1196
                     ||.||.||||||||.||||||||||||.|..|.|||||.|||||||||||
RBAM_006230__   1147 TCTGCGGCGCTGAGAGTCAACGCGAAGAATATTAACAGACCGTTTTATTT   1196

BSNT_05207___   1197 AAAAGGAATGAGTATTATCGGGCCGCTTTCCTTTATATTTACAGCGTTTA   1246
                     ||||||.|||||.||.|||||||||||.||.|||||.|||||..|.|.||
RBAM_006230__   1197 AAAAGGGATGAGCATCATCGGGCCGCTGTCGTTTATTTTTACCTCTTATA   1246

BSNT_05207___   1247 TCGTGTACTGGTCAGGATGGAAAACAGTCTCCTGGCTGCTCGGTTCACAG   1296
                     |.||.||.|||||.||||||...||.||.||||||||.||||||||.||.
RBAM_006230__   1247 TAGTATATTGGTCCGGATGGCGCACCGTATCCTGGCTTCTCGGTTCTCAA   1296

BSNT_05207___   1297 CTCGTGATGTTTTTGATCTATCTCTGTTTCAGCAAATATACGCCTAAAGA   1346
                     .|.||.||||||.|||||||||||||||||||.||||||.|.||.|||||
RBAM_006230__   1297 ATTGTCATGTTTCTGATCTATCTCTGTTTCAGTAAATATGCTCCCAAAGA   1346

BSNT_05207___   1347 AGATGTCAGCCT-CGCTCAGCAGCTGAAATCAGCCTGGTGGCTTATCGGG   1395
                     .|||||||||.| || .|||||||||||||||||.||||||.|..||||.
RBAM_006230__   1347 TGATGTCAGCATACG-GCAGCAGCTGAAATCAGCATGGTGGATCGTCGGC   1395

BSNT_05207___   1396 TTTTATATTATGATGCTGATCTTTTCCTACATCGGTTCTTTCGGACATGG   1445
                     ||||||.|.|||||||||||.||.|||||..||||.||.|||||.||.||
RBAM_006230__   1396 TTTTATGTCATGATGCTGATTTTCTCCTATCTCGGCTCGTTCGGCCACGG   1445

BSNT_05207___   1446 TTTAGGGATTATCAGCAATCCCGTCGACCTCATTTTAGTCGCGATCGGCT   1495
                     .||.||.||||||||||||||..|.|||||.|||.|..||||.|||||.|
RBAM_006230__   1446 ATTGGGCATTATCAGCAATCCGCTTGACCTGATTCTGATCGCCATCGGTT   1495

BSNT_05207___   1496 CACTTGCGATTTATTACTGGGCAAAGTATACCGGGCTCCCAAAAGC----   1541
                     |.||.|..|||||||||||||||||.|||||.||.||.||.||.||    
RBAM_006230__   1496 CGCTCGGTATTTATTACTGGGCAAAATATACGGGTCTGCCGAAGGCTATG   1545

BSNT_05207___   1542 --CGCCATTGATTACGATAAATAA   1563
                       ||.||.|      |||||||.|
RBAM_006230__   1546 ATCGACAGT------GATAAATGA   1563


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