Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01014 and RBAM_006240

See Amino acid alignment / Visit BSNT_01014 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:41
# Commandline: needle
#    -asequence dna-align/BSNT_01014.1.9828.seq
#    -bsequence dna-align/RBAM_006240___ydhU.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01014-RBAM_006240___ydhU.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01014-RBAM_006240___ydhU.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01014
# 2: RBAM_006240___ydhU
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 862
# Identity:     547/862 (63.5%)
# Similarity:   547/862 (63.5%)
# Gaps:         128/862 (14.8%)
# Score: 1894.5
# 
#
#=======================================

BSNT_01014         0 --------------------------------------------------      0
                                                                       
RBAM_006240__      1 ATGTATTATTACAAAGAAGAGCTGATCAATATCATTAAACCGGACAAGCC     50

BSNT_01014         0 --------------------------------------------------      0
                                                                       
RBAM_006240__     51 GGACCCGGCCGCGGCCAAGGTGCTTCAGGAAATTTTAGGCGGGCACTACG    100

BSNT_01014         1 --------------ATGATGCAGTTTTTTTTTCAAAGCTCTAATTTCAGA     36
                                   ||||||||.|..|||||.||||||||||||||||||
RBAM_006240__    101 GAGAAATGCGGACGATGATGCAATACTTTTTCCAAAGCTCTAATTTCAGA    150

BSNT_01014        37 GGAAAGCAGAAACAGTACCGCGATCTGCTTCGTGGCATTTTTTTGGAGGA     86
                     |||||..|.|||||||.|||.||.||||||||.||..|.|||||.||.||
RBAM_006240__    151 GGAAAAGAAAAACAGTTCCGTGACCTGCTTCGCGGTGTATTTTTAGAAGA    200

BSNT_01014        87 GATTGCCCACGTTGAACTGGTTCAAAACACAATCAATGCTTTATTAGATG    136
                     |||.||.||||||||.||.||.||..|.||.||.|||||..|..|.||.|
RBAM_006240__    201 GATCGCACACGTTGAGCTTGTCCAGCATACGATTAATGCGCTGCTCGACG    250

BSNT_01014       137 AATCAGGCGGTGAAGGTGTCGGCAGTCAAGGTA-CAGATCAAGCGCCACT    185
                     ||...||||.|||.||...|||.|.|| |||.| |||||||.|||||.||
RBAM_006240__    251 AAAGCGGCGCTGAGGGCCCCGGAAATC-AGGCAGCAGATCAGGCGCCGCT    299

BSNT_01014       186 TGATGAAGCGGTTAAACATGCTAATCCTCATCATTATATTATTGGAGCGC    235
                     |||.|||||.||||||||.||.|||||.||.||||.|||.||.|||||||
RBAM_006240__    300 TGACGAAGCAGTTAAACACGCCAATCCGCACCATTTTATCATCGGAGCGC    349

BSNT_01014       236 AAAGTTCCCTTCCGGTTGATGCAGGAGGCAATCCGTGGAACGGGTCGTGG    285
                     |||||||.|||||.||.||.||.||.||||||||.|||||||||||.|||
RBAM_006240__    350 AAAGTTCTCTTCCTGTAGACGCCGGCGGCAATCCATGGAACGGGTCTTGG    399

BSNT_01014       286 GTGTATAACCACGGAAACTTAATTACTGACCTGCTGGATAACCTGCTTCT    335
                     ||.||.||||||||.||..|.|||.|.||..|..||||.||..|..|.||
RBAM_006240__    400 GTATACAACCACGGGAATCTGATTTCCGATTTATTGGACAATGTCGTGCT    449

BSNT_01014       336 TGAGTCGACAGGTGTGCTGCAAAAAACAAGAATTTATGAAATGAGCTCTA    385
                     .||.||.||.||.|||||||||||.|||.|.||||||||||||||.||.|
RBAM_006240__    450 GGAATCAACCGGCGTGCTGCAAAAGACACGCATTTATGAAATGAGTTCAA    499

BSNT_01014       386 ATCAGACATTCCGCGAAACACTTGCTTTTCTGATTGTACGCGACAATGCT    435
                     |||||||.|||.|.||||||||.|..||||||||.||.||.|||||.||.
RBAM_006240__    500 ATCAGACGTTCAGAGAAACACTCGGATTTCTGATCGTCCGTGACAACGCC    549

BSNT_01014       436 CACCAGAATGCATTCGCGAAAGCGCTCGAGACATTGGGCGTTGAGTGGGC    485
                     ||.||.||||||||..|.||||||.|.||.|||.||||.||.||.||||.
RBAM_006240__    550 CATCAAAATGCATTTACAAAAGCGTTGGAAACACTGGGTGTCGAATGGGG    599

BSNT_01014       486 GAAGCTCCTCCCTGTGCCGAATTATGACATTAATAAATATCCTGAGTGCA    535
                     .||..|..|.||.||||||||||||||.|||.|.|||||.||.||.|||.
RBAM_006240__    600 CAAATTATTTCCCGTGCCGAATTATGATATTGAAAAATACCCGGAATGCC    649

BSNT_01014       536 GAAAGTATGTCGAATTAGGCTACCATAATGCACAGTTTAACTTTAGGTTG    585
                     |.||.|..||.||..|.||.||.||||||.|.||.|||||.||.||..||
RBAM_006240__    650 GGAAATTCGTTGAGATGGGTTATCATAATACCCAATTTAATTTCAGACTG    699

BSNT_01014       586 GAT--GAAACGAGAATCGATGAAATCTATCAAGGGAA--ATCTCCAAGCC    631
                     |||  ||.||  |.||||..||||| |.|..||||||  | |.||.||||
RBAM_006240__    700 GATCCGACAC--GGATCGGAGAAAT-TCTGCAGGGAACGA-CGCCGAGCC    745

BSNT_01014       632 GAAATGGCGGAGAGTTACAAGTAATAGATCCACCGGCAGGGTTTCCCGTA    681
                     ||||.|||||.||.|||...||....||.||.||...|||.||.|||||.
RBAM_006240__    746 GAAACGGCGGCGAATTAAGTGTGTCCGAGCCTCCTAAAGGTTTCCCCGTG    795

BSNT_01014       682 CCAGTGCTTCCTGAAATACCAAATGAACACAGTCCTGGGTTAGGCGATAT    731
                     ||.|..|||||||||.|.||.|||||.|||||.||.||..|....|||||
RBAM_006240__    796 CCGGAACTTCCTGAACTTCCGAATGAGCACAGCCCCGGACTGAAAGATAT    845

BSNT_01014       732 GAATGCT--TAA    741
                     |||  ||  |||
RBAM_006240__    846 GAA--CTTGTAA    855


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