Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01061 and RBAM_006580

See Amino acid alignment / Visit BSNT_01061 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:44
# Commandline: needle
#    -asequence dna-align/BSNT_01061.1.9828.seq
#    -bsequence dna-align/RBAM_006580___pspA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01061-RBAM_006580___pspA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01061-RBAM_006580___pspA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01061
# 2: RBAM_006580___pspA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 698
# Identity:     244/698 (35.0%)
# Similarity:   244/698 (35.0%)
# Gaps:         385/698 (55.2%)
# Score: 851.0
# 
#
#=======================================

BSNT_01061         0 --------------------------------------------------      0
                                                                       
RBAM_006580__      1 ATGAGTATTTTAGGAAGATTTAAAGACATCATGTCAAGCAATATCAATGC     50

BSNT_01061         0 --------------------------------------------------      0
                                                                       
RBAM_006580__     51 GCTGCTGGATAAAGCTGAAAACCCTGAAAAAATGGTTGATCAATATTTGC    100

BSNT_01061         0 --------------------------------------------------      0
                                                                       
RBAM_006580__    101 GGAATCTGAACAGTGATTTAGGAAAAGTGAAAGCGGAGACGGCTTCTGTC    150

BSNT_01061         0 --------------------------------------------------      0
                                                                       
RBAM_006580__    151 ATGGCTGAGGAACAGCGGGCGAAAAGAACGTTAACAGAATGCCAGGCTGA    200

BSNT_01061         0 --------------------------------------------------      0
                                                                       
RBAM_006580__    201 TGCCGAAAAGATGGAAAGTTATGCGATGAAAGCGTTGCAGGCCGGCAATG    250

BSNT_01061         0 --------------------------------------------------      0
                                                                       
RBAM_006580__    251 AAGCCGATGCGCGGACATTTTTGGAAAGGAAAGCGGCTGTTGAATCAAGA    300

BSNT_01061         0 --------------------------------------------------      0
                                                                       
RBAM_006580__    301 CTGACTGAGCTGCAGACGGCTTATCAGCTCGCTTCTTCCAACGCCTCTCA    350

BSNT_01061         1 ----------ATGCATGACAAATTGGTATCTGACATTGGAGAGCTGGAAG     40
                               |||||||||||..|.||..||||.||.||||||||.||..
RBAM_006580__    351 AATGCGCAAAATGCATGACAAGCTTGTCGCTGATATCGGAGAGCTTGAGT    400

BSNT_01061        41 CACGTAAAAATATGATCAAGGCGAAGTGGGCAGTAGCGAAAACGCAAGAA     90
                     |.||...||||...|||||.|||||||||.|.||.||.||||||||.||.
RBAM_006580__    401 CGCGCCGAAATGCCATCAAAGCGAAGTGGTCTGTGGCAAAAACGCAGGAG    450

BSNT_01061        91 AGAATGAACAAACTGGACGCTTCTGTTTCAAGTACAAGCCAATCAATGTC    140
                     ||||||||||||.|||...|.|||||.||||.|.|..|||||||.|||.|
RBAM_006580__    451 AGAATGAACAAATTGGGGTCCTCTGTGTCAAATGCGGGCCAATCGATGAC    500

BSNT_01061       141 TGCATTCGGCCGAATGGAGGACAAAGTAAATAAGGCACTTGATCAGGCCA    190
                     .||.||||||.|||||||.|||||.||.||..|.||.||||||||.||||
RBAM_006580__    501 AGCTTTCGGCAGAATGGAAGACAAGGTCAACCAAGCGCTTGATCATGCCA    550

BSNT_01061       191 ATGCAATGGCTGAACTGAACAGCG-CTCCGCAGGATGATATGGCTGATCT    239
                     ||||.||||||||.|||||| ||| |||||.|.||.|||||.|..|||||
RBAM_006580__    551 ATGCGATGGCTGAGCTGAAC-GCGTCTCCGAAAGACGATATTGACGATCT    599

BSNT_01061       240 GACTGCAAAGTATGACACTGGCGGTTCAAGCCAG-ATTGATGATGAACTT    288
                     |||.||.||.|||||||   || ..||||..||| .|.|||||||||.|.
RBAM_006580__    600 GACGGCTAAATATGACA---GC-AATCAAAGCAGTGTCGATGATGAATTG    645

BSNT_01061       289 GCGGCG-TTAAAAGC-GAAAATGATGCTCGATAAGTAA----------    324
                     |||||| ||  |||| |||||||.|..||    |||||          
RBAM_006580__    646 GCGGCGCTT--AAGCAGAAAATGCTTTTC----AGTAAAGATCAATAG    687


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