Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03929 and RBAM_006640
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:12
# Commandline: needle
# -asequence dna-align/BSNT_03929___sigV.1.9828.seq
# -bsequence dna-align/RBAM_006640___sigV.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03929___sigV-RBAM_006640___sigV.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03929___sigV-RBAM_006640___sigV.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03929___sigV
# 2: RBAM_006640___sigV
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 503
# Identity: 411/503 (81.7%)
# Similarity: 411/503 (81.7%)
# Gaps: 7/503 ( 1.4%)
# Score: 1673.5
#
#
#=======================================
BSNT_03929___ 1 ATGAAGAAAAAAC-AAACAACAAAAGCGTTGCTTGTCACATGCATAACTG 49
|||||| ||| |||||.|.|||||||.||||||.||.||||||||||
RBAM_006640__ 1 ATGAAG----AACGAAACAGCCAAAGCGTCGCTTGTGACGTGCATAACTG 46
BSNT_03929___ 50 ACCATAAGCAAGATTTCTACAGGTTGGCTTTCAGTTATGTGAAAAATCAA 99
|.|..|||.||||.||.|||.||.||||.|.||||||.|| |||.|.|||
RBAM_006640__ 47 AGCGCAAGGAAGACTTTTACCGGCTGGCGTACAGTTACGT-AAAGAACAA 95
BSNT_03929___ 100 -GATGACGCATTAGATATTGTTCAGGAATCGATAAAAAAAGCGCTGAGCT 148
||||||||.||||||||||||||||||||.||..||||||||||||..|
RBAM_006640__ 96 GGATGACGCGTTAGATATTGTTCAGGAATCAATTCAAAAAGCGCTGACAT 145
BSNT_03929___ 149 CAGTTGAAACGGTCAGGAACCCTGAGACGATAAAAAGCTGGTTTTATAAA 198
|.||.|||.|.||||..|||||.||...|||.||||||||||||||||||
RBAM_006640__ 146 CGGTCGAATCCGTCAAAAACCCCGATGTGATCAAAAGCTGGTTTTATAAA 195
BSNT_03929___ 199 ATTTTAGTGCGGACAGCCATTGATTTTTTGCGCAAACAAAAAAAGATAAG 248
|||||||||||.|||||||||||||||.|.||||||||.|||||..|.|.
RBAM_006640__ 196 ATTTTAGTGCGCACAGCCATTGATTTTCTCCGCAAACAGAAAAAACTGAA 245
BSNT_03929___ 249 AGTGATGGACGACGAAACGATAGAATTTTTAAGCAAAGGAAAGGAAGACC 298
||||||||||||.||||||||.||.|||||||||...|||||||||||.|
RBAM_006640__ 246 AGTGATGGACGATGAAACGATCGAGTTTTTAAGCCGCGGAAAGGAAGATC 295
BSNT_03929___ 299 ATTACAAGGATACTGATCTCTATGAAGCGCTTGACGAATTGCCGTACCGC 348
|.|||||.||.||.|||||..|.|||||||||||.||..|||||.|.|..
RBAM_006640__ 296 ACTACAAAGACACAGATCTTCACGAAGCGCTTGATGACCTGCCGCATCAA 345
BSNT_03929___ 349 TATAAAACCATTATTATTTTACGTTTTTTTGAAGACCTCAAATTAGAAGA 398
||||||||||||||.|||.|.|||||.|||||||||||.|||||||||||
RBAM_006640__ 346 TATAAAACCATTATCATTCTGCGTTTCTTTGAAGACCTGAAATTAGAAGA 395
BSNT_03929___ 399 AATTGCGGAAATTACAGGAGAAAACACGAATACCGTCAAAACGCGCCTAT 448
|||.||.||.||.||.||.|||||||..||.|||||||||||.|||||.|
RBAM_006640__ 396 AATCGCAGACATCACGGGGGAAAACATCAACACCGTCAAAACACGCCTTT 445
BSNT_03929___ 449 ACAGAGCATTGAAGCTGATGCGCATTCAGCTGACGAAGGAGGATCTTTCT 498
||||.|...|||||||.|||||||||||||||||||||||||||||||||
RBAM_006640__ 446 ACAGGGGGCTGAAGCTCATGCGCATTCAGCTGACGAAGGAGGATCTTTCT 495
BSNT_03929___ 499 TAA 501
|||
RBAM_006640__ 496 TAA 498
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