Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_01076 and RBAM_006680

See Amino acid alignment / Visit BSNT_01076 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:45
# Commandline: needle
#    -asequence dna-align/BSNT_01076.1.9828.seq
#    -bsequence dna-align/RBAM_006680.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01076-RBAM_006680.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01076-RBAM_006680.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01076
# 2: RBAM_006680
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 185
# Identity:     104/185 (56.2%)
# Similarity:   104/185 (56.2%)
# Gaps:          52/185 (28.1%)
# Score: 265.5
# 
#
#=======================================

BSNT_01076         1 GTGATCTCAAAC---CAGCAGCAAAAAGACTTGAAAAAAAGAGCTGCGTT     47
                        ||...||||   |.||||||.||.||..||||..|||..||      
RBAM_006680        1 ---ATGAAAAACGATCGGCAGCAGAACGATCTGAAGGAAATGGC------     41

BSNT_01076        48 CAAAAA--GCTGAATGTTGCAATGAAC------------TCATATGTTGA     83
                       ||||  ||.|||      |||||||            ||||...|.||
RBAM_006680       42 --AAAACGGCGGAA------AATGAACCTTGCCGCACAGTCATTCATCGA     83

BSNT_01076        84 A---CTTCTGTTTTTGTCGATGCCGCTAATCCATTTTTTTAAATGGCTCG    130
                     |   ||||  .|||||.|| |.|||.|..|||.||||||.||||||||||
RBAM_006680       84 AACGCTTC--ATTTTGCCG-TTCCGATTCTCCGTTTTTTCAAATGGCTCG    130

BSNT_01076       131 GATCATTAGCCCTGCACCTCA------TCCATTAA    159
                        |.|.||||  |||.| ||      |.||||||
RBAM_006680      131 ---CCTCAGCC--GCAGC-CAGCTTTGTTCATTAA    159


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.