Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01088 and RBAM_006740

See Amino acid alignment / Visit BSNT_01088 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:46
# Commandline: needle
#    -asequence dna-align/BSNT_01088.1.9828.seq
#    -bsequence dna-align/RBAM_006740___yeaD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01088-RBAM_006740___yeaD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01088-RBAM_006740___yeaD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01088
# 2: RBAM_006740___yeaD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1350
# Identity:     796/1350 (59.0%)
# Similarity:   796/1350 (59.0%)
# Gaps:         318/1350 (23.6%)
# Score: 2155.0
# 
#
#=======================================

BSNT_01088         1 ATGAATAAGAA-ATGGCAATGGCTCGTATATGGTTGGAAGCTGATTATAT     49
                     ||||..||||| || |||.|||||..|||||||.|||||||||.||||.|
RBAM_006740__      1 ATGAGAAAGAAGAT-GCATTGGCTTCTATATGGCTGGAAGCTGCTTATGT     49

BSNT_01088        50 TAACTTTATTGACGGCTGCTGTTTTTTCTTATGCGATGTTTCAGGGCGGC     99
                     |..|..||.|||||||.|||||.|||||||||||.||||||||||||||.
RBAM_006740__     50 TGGCCGTACTGACGGCGGCTGTCTTTTCTTATGCCATGTTTCAGGGCGGA     99

BSNT_01088       100 TTTGTCAGCTGGTTTTTGTTTTACACGTTTCTCCCTTTTGTCTTGTATGC    149
                     |||||.|||||||||||.|||||..|||||.|.||.|||..|.|.||.||
RBAM_006740__    100 TTTGTGAGCTGGTTTTTATTTTATGCGTTTTTGCCATTTACCGTTTACGC    149

BSNT_01088       150 CGGGCTGTTGGCCTTATATCCGCTCCGTTCTTTTCAGGCTTCAAGGCAAA    199
                     |||||||.|.||..|.||.|||||.||..|.|||||||            
RBAM_006740__    150 CGGGCTGGTCGCTGTGTACCCGCTGCGGGCGTTTCAGG------------    187

BSNT_01088       200 TGG----------------------ATAAAACACAATTGCATGCGGGGGA    227
                     |||                      .|.||.|.||          ||.||
RBAM_006740__    188 TGGCGCGTGACGTGTCCTCCGCCCAGTTAACCTCA----------GGCGA    227

BSNT_01088       228 CAGGCTGGGCGTAACGGTTACGCTGAGAAGAAAGCTGCCATTTCCCCTGA    277
                     |||||||...||.||..|.|.|||||..||....|||||.|||||.||||
RBAM_006740__    228 CAGGCTGTCTGTCACCATCAGGCTGACGAGGCGCCTGCCGTTTCCGCTGA    277

BSNT_01088       278 TGTATATGGTGATTGAAGAT-TGCCTGCCAGAA------GGTATCGAGTC    320
                     ..||||||||.||||||||| || .||||.|||      ||         
RBAM_006740__    278 CATATATGGTCATTGAAGATGTG-ATGCCGGAAACGCTTGG---------    317

BSNT_01088       321 ATTAAATCGAGACGGAGCCGCGGCCAAACGGCTCGTTTTTCCTTGGTTT-    369
                            ||||| ||.||.| .||.||||.||||||.|||||.|||||| 
RBAM_006740__    318 -------CGAGA-GGCGCAG-TGCGAAACAGCTCGTGTTTCCGTGGTTTC    358

BSNT_01088       370 AAACGGAGCATGACGATGTCGTATGAATTAGCT----CGGGTACCGCGCG    415
                     |||.|.||| |||||.|....||||    ||||    |.|||.|||||||
RBAM_006740__    359 AAAGGAAGC-TGACGTTACAATATG----AGCTGCCGCAGGTGCCGCGCG    403

BSNT_01088       416 GAGAGCATCACTTTCATTCTGTCAGGGTGCGAACCGGGGATGTTCT-TGG    464
                     ||||||||||.||.|||.|..|.||.|||||.||.||.|||||||| .||
RBAM_006740__    404 GAGAGCATCATTTACATACGATAAGAGTGCGCACGGGAGATGTTCTCGGG    453

BSNT_01088       465 CTTGATT-GAAAAAACTACAT--TTTTTGAGCTGGA--TGATACCCTGTT    509
                     |||  || ||.||.||..|.|  ||||    |.|.|  .||||  |.|||
RBAM_006740__    454 CTT--TTGGACAAGACGGCGTCGTTTT----CCGTAACGGATA--CGGTT    495

BSNT_01088       510 -TGTTTATCCATTCTATCAGCGT-------TTTTC-CTATCAGGTGAATG    550
                      ||.||.|||       |.||||       |.||| ||||.||..|.|  
RBAM_006740__    496 CTGGTTTTCC-------CGGCGTACGGGTCTGTTCACTATAAGCCGCA--    536

BSNT_01088       551 AGAGGCATCAG--GAAGACGG------TGTAAGCGGTTCTTCTCCTATTC    592
                     .|..|||||.|  |||||.||      ||...|||      ||||..|||
RBAM_006740__    537 GGCCGCATCCGGAGAAGAGGGTACGGCTGCCGGCG------CTCCGTTTC    580

BSNT_01088       593 ATCAGCACCATTCCTCAGTCGCAGCAAGTGTGCGGAATTATCAGCCGGGA    642
                     |....||||..|||.||.|.||.||.||.||..|.|||||.||||||||.
RBAM_006740__    581 AGGTACACCGCTCCGCAATGGCTGCGAGCGTCAGAAATTACCAGCCGGGC    630

BSNT_01088       643 GACCGGTTTGCTGCGTTAGATTGGAAGACTTCTGCACGGCGGAGCCAGCT    692
                     |||||||||.|.||..|.||.|||||.||.||.||.|||||.|...||||
RBAM_006740__    631 GACCGGTTTTCCGCACTTGACTGGAAAACATCAGCGCGGCGAAATGAGCT    680

BSNT_01088       693 GATGACGAAGGAATTTGAGCCTTCTCGCAGCAAA-----AATCTGTTTCT    737
                     ||||||||||||||||||     |.|||.|||.|     |||.||.||||
RBAM_006740__    681 GATGACGAAGGAATTTGA-----CCCGCTGCAGAGTGTGAATATGATTCT    725

BSNT_01088       738 GCTGATGGA-------CCGTTTTTCCTCTGACGCATTCGAAGAGGTCGTT    780
                     .||..||||       |||    |||.|                .|||||
RBAM_006740__    726 CCTTTTGGACTGCAGGCCG----TCCCC----------------ATCGTT    755

BSNT_01088       781 T-------CAGTGACAGCTTCG--ATTCTTTATTCTGTTTTAAAAAACGG    821
                     |       |.||..||||||||  ||.|      |||.|||   |.||||
RBAM_006740__    756 TGAAGCCGCGGTATCAGCTTCGGCATCC------CTGCTTT---ACACGG    796

BSNT_01088       822 CGC-------GGGCGCTGGC-CTGG----CTTCCATCGGGAAG-GAAAAA    858
                     |||       ||||.||..| |.||    .||.|||.|||.|| ||....
RBAM_006740__    797 CGCTTGTGAAGGGCTCTCCCGCAGGATTTATTTCATTGGGGAGCGACCGG    846

BSNT_01088       859 AACAT-TTTCCCTATTCAGGAAGGG-GATCAGCATTTTAAGCACATGCTT    906
                     |.|.| ||||||  .||.||.|||| ||.|.||||||.|...|.|||||.
RBAM_006740__    847 ACCGTATTTCCC--GTCCGGGAGGGAGACCGGCATTTCAGAAAGATGCTG    894

BSNT_01088       907 CGGCATTTA---GCCATC-GC-TCATTGTGATGCGGCAGACCCGATAAGC    951
                     ||    |||   |.|||| || |||    ||..|||.||       ||||
RBAM_006740__    895 CG----TTACCTGGCATCAGCTTCA----GAATCGGAAG-------AAGC    929

BSNT_01088       952 CGATATGCA--CGGG----------AAGAGCTGGGAAAGCCATCTGTTCG    989
                     ||  |||||  ||||          |||||||||...|.||....||.||
RBAM_006740__    930 CG--ATGCAGGCGGGCGTTTAGGAAAAGAGCTGGCGGATCCGCGCGTCCG    977

BSNT_01088       990 CCAAGCTGATCAAGTT---GTTGTCACGGGACAGT-TAACGGAAGATATG   1035
                     |.|||||  ||.| ||   ||.||.||||| |||| |.||.||||     
RBAM_006740__    978 CAAAGCT--TCCA-TTGCCGTCGTGACGGG-CAGTCTTACAGAAG-----   1018

BSNT_01088      1036 CTGCACC-TCGCAGAAATAGGAGG----CGGCCGGG------TTACGGTG   1074
                         ||| ||.|  |||.|||..|    ||||||.|      |.||||||
RBAM_006740__   1019 ----ACCTTCTC--AAACAGGCTGAGCCCGGCCGTGCTGACATGACGGTG   1062

BSNT_01088      1075 ATACTGGCAAAAGAGAAAG-ATGCTGAGCTCTCTCAAGCTGAAAATGCCA   1123
                     .|..||||.||||| ||.| ||||.|.|||.||    |..||||      
RBAM_006740__   1063 TTTTTGGCGAAAGA-AACGAATGCCGCGCTTTC----GGAGAAA------   1101

BSNT_01088      1124 TGATTGAACGCATGATGAAACGC---CAAATCAGAGTTCGGGTCA-----   1165
                          |||||      |||||.|   |..|||    ||| |.|||     
RBAM_006740__   1102 -----GAACG------GAAACTCGCTCTCATC----TTC-GCTCAAAAAA   1135

BSNT_01088      1166 ----TGAGGGGC---------GGG-----CGAGTTTCGCGTGTTGTTTAG   1197
                         |.|||.||         |||     ||.||.||.|.||||||||||
RBAM_006740__   1136 ATATTAAGGTGCAAATGATCAGGGACAAACGGGTGTCCCATGTTGTTTAG   1185


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