Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01089 and RBAM_006750
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:46
# Commandline: needle
# -asequence dna-align/BSNT_01089.1.9828.seq
# -bsequence dna-align/RBAM_006750___yebA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01089-RBAM_006750___yebA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01089-RBAM_006750___yebA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01089
# 2: RBAM_006750___yebA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2362
# Identity: 1601/2362 (67.8%)
# Similarity: 1601/2362 (67.8%)
# Gaps: 302/2362 (12.8%)
# Score: 5261.0
#
#
#=======================================
BSNT_01089 1 ATGCCGCACGATGATCACAAGGGAAGCCGTTTGAGCTTGCTGTTATTTTA 50
||||||||.||.||..||.||||||||.|..||||..|||||.|.|||||
RBAM_006750__ 1 ATGCCGCATGACGAGAACCAGGGAAGCAGGCTGAGTCTGCTGCTGTTTTA 50
BSNT_01089 51 TTTTCTGGCTTTTTTATTGCTGTGGGAGTGGCTCAGGCCGCTTGACAGTT 100
||||||.||||||||||||.|.|||||.||||||||||||||..|||.||
RBAM_006750__ 51 TTTTCTCGCTTTTTTATTGTTATGGGAATGGCTCAGGCCGCTGCACAATT 100
BSNT_01089 101 TTACTGAAACGAAACATACAGGCTTTTTTAGTGTCTTTATCGGTTTGACG 150
||||.||.||.||||||||.||.|||||.|..||.||||||||||||.|.
RBAM_006750__ 101 TTACGGATACAAAACATACCGGTTTTTTCATCGTTTTTATCGGTTTGGCA 150
BSNT_01089 151 TTTCTGCTGACTTTTTTCAGGATGAGGTGGTTTGTCACCGT----TCCT- 195
|||||||||.|.||.|||.||||||||||||..|||||||| ||||
RBAM_006750__ 151 TTTCTGCTGTCATTCTTCCGGATGAGGTGGTACGTCACCGTGCCGTCCTG 200
BSNT_01089 196 --TTTTGTGTCATATTTACATTGATCTCGATACACATCCTGTTTTATCAA 243
||.|| |||||.||||||...||.|||||||||||||||.||
RBAM_006750__ 201 CATTCTG-------TTTACGTTGATCAGTATTCACATCCTGTTTTATAAA 243
BSNT_01089 244 GGATCTATATTCGACTTGAGC-----TGGGTCAGCTCTTTTTTGCAGGAT 288
||.||..|.| ||.||| |||.||...||||||||||.|||.
RBAM_006750__ 244 GGTTCGGTTT-----TTCAGCCGGAATGGTTCGTTTCTTTTTTGCGGGAC 288
BSNT_01089 289 GTCTATCTG-AATAT-CACGCTGATTCA-ATCTGGGC-----AATGGAAT 330
|| ..|| ||.|| |.||| || |||.||.| .|||||||
RBAM_006750__ 289 GT---GATGCAAAATGCCCGC-----CACATCGGGTCCGGAAGATGGAAT 330
BSNT_01089 331 GACATGATTCCTTCATTTCGGACCCTGCTGTTTTTTGTGCTGCTGTGGCT 380
|||||||.|||.|||||.||.||..||||||||||||||||..|.|||||
RBAM_006750__ 331 GACATGAATCCGTCATTCCGCACATTGCTGTTTTTTGTGCTTTTATGGCT 380
BSNT_01089 381 GCTGGTCTATCTCCTGCATTATTGGGTGATTTACCAGAGAAGAATTTTGT 430
|||.||.|||.|.||||||||.||||||||.||.|||.|.|.|||.||.|
RBAM_006750__ 381 GCTCGTGTATTTGCTGCATTACTGGGTGATCTATCAGCGGAAAATATTAT 430
BSNT_01089 431 TTTTCTTTTTGATGACAGTAGCGTATATTACGATTCTTGATACCTTTACG 480
|.||.|||.|.|||||.||.||||||||.||..|.||||||||.|||||.
RBAM_006750__ 431 TCTTTTTTATCATGACGGTGGCGTATATCACCGTGCTTGATACGTTTACT 480
BSNT_01089 481 CCATATGATGCCACTTTTGCCGTCATCCGTATCGTGCTGATCGGCTTCTT 530
||.|||||||||.|.|..|||||||||||.|||||..|.||||||||.||
RBAM_006750__ 481 CCTTATGATGCCGCGTACGCCGTCATCCGGATCGTCTTTATCGGCTTTTT 530
BSNT_01089 531 TATGCTGGGCCTTTTATACTTGGAACGCATTAAGCTGATGGAAAGAATCA 580
.|||.||||.|||||.||..||||.|||||...|||.|.|||| ||
RBAM_006750__ 531 GATGATGGGGCTTTTGTATATGGAGCGCATCCGGCTTACGGAA-----CA 575
BSNT_01089 581 CACTGC-----CAAAAACATCTG-TCCTGAAATGGTTTCTTCC------- 617
||..|| .|||||.|| || |.||.|||||||||||.||
RBAM_006750__ 576 CATAGCGTTTAAAAAAAGAT-TGATACTCAAATGGTTTCTGCCGCTGATG 624
BSNT_01089 618 ---TTTATCTGTATTGGTTTTGGCTGCAACG--GTATTCGGACTCGCCGC 662
|||||||| .|||.| || ||.|||||.||.||.||
RBAM_006750__ 625 CTGTTTATCTG----------CGCTTC--CGTCGTGTTCGGTCTGGCGGC 662
BSNT_01089 663 TCCAAAATCAGAGCCGGCCTGGCCTGATCCGGTGCCTTTTCTTAAAAAAA 712
|||.||||||||.|||..||||||.|||||.|||||.|||||||||||||
RBAM_006750__ 663 TCCGAAATCAGACCCGAACTGGCCGGATCCCGTGCCGTTTCTTAAAAAAA 712
BSNT_01089 713 TCAC---TCATCAAGACCGCGTGTCTGCAGGGGAAAGCAAAATCGGATAC 759
|.|| .||..|||| .|||.|.||.|..||||||||||||||.|||
RBAM_006750__ 713 TAACAAACCACAAAGA---AGTGCCCGCCGCCGAAAGCAAAATCGGCTAC 759
BSNT_01089 760 GGGAATCATGATGAATCACTCGGCGGCCCGTTCCAGCAGGATGCTACACC 809
||.||||||||||||.||.|.||||||||.||.||||||||||.|||.||
RBAM_006750__ 760 GGCAATCATGATGAAACATTGGGCGGCCCTTTTCAGCAGGATGATACGCC 809
BSNT_01089 810 TGTTTTTACATGGCAGGGAAAAGAGCGTACGTATTTCCGTGTGGAAACGA 859
.|||||.||||||.||||||||||.||..||||.|||||.||||||||||
RBAM_006750__ 810 GGTTTTCACATGGAAGGGAAAAGAACGGGCGTACTTCCGGGTGGAAACGA 859
BSNT_01089 860 AGGACACGTATACCGGAAAAGGCTGGATTGAAACAGA-CACAGGCATGTC 908
||||.||.||.||.||.|||||||||.|.||.||.|| || .||||||||
RBAM_006750__ 860 AGGATACATACACGGGGAAAGGCTGGGTGGAGACCGATCA-GGGCATGTC 908
BSNT_01089 909 GTATCAGCTTAGCAATGGAAAAGTTGAAAATTTGTGGTTTGACCATAAGG 958
.|||.|.||.|.|...||.||.||.|||.||.|.|||||||||| ||
RBAM_006750__ 909 CTATAAACTGAACGGCGGCAACGTGGAAGATATATGGTTTGACC----GG 954
BSNT_01089 959 -TTGCGACAGA-GAGCCG---TACCGTCC--GTGTAAAAGTCGATAAGCA 1001
.||.| |||| |||.|| |||.|..| ||||..| |.|||.||.|
RBAM_006750__ 955 AGTGTG-CAGACGAGACGGTATACGGCACAGGTGTCCA--TTGATGAGAA 1001
BSNT_01089 1002 CTACGGGTATAACCATCTGATGTATCCGATTGG----TGCGGAAACCATT 1047
.||....|||||.||..|.|||||||||||.|| |.| |..|||
RBAM_006750__ 1002 TTATCTCTATAATCACGTCATGTATCCGATCGGCGTCTCC----AATATT 1047
BSNT_01089 1048 CAGCCAAAGCAGGCT-GTCTCA-CTTGAAATGAACGGCAACACGGAGCAA 1095
.|.||.||||| || |..||| ||||||||||||||.|||||.||||||
RBAM_006750__ 1048 AAACCGAAGCA--CTCGATTCAGCTTGAAATGAACGGAAACACCGAGCAA 1095
BSNT_01089 1096 ATTTCTCCGATCAGTGAACAAGCCGGTGAAATCAGAAATATGGGGAATTA 1145
|||.|.|||.||||||||||||..||..|.|||.|.||||||||....||
RBAM_006750__ 1096 ATTACGCCGGTCAGTGAACAAGTGGGCAACATCCGCAATATGGGACGGTA 1145
BSNT_01089 1146 TACAGTAACGTACAATTC-----CCCGGTCTATAAGCTGGATGAACTGAG 1190
.||.||.||.| ||| ||| ||||.|||||||.||||.||.||
RBAM_006750__ 1146 CACGGTGACTT----TTCAGGCGCCC-GTCTTTAAGCTGAATGATCTCAG 1190
BSNT_01089 1191 AAAGGTAAAAGTGAGAAAAAACAGTGAGGAGTA-CACATTCAGCGATCGC 1239
|||.||.|||||||.|..|.||.|||||.||.| || |||||..||.||.
RBAM_006750__ 1191 AAAAGTGAAAGTGAAACGATACCGTGAGCAGAATCA-ATTCAATGACCGG 1239
BSNT_01089 1240 TACATGCAGCTTCCAGATTCA--CTGCC----AGAGCGGGTGAGAACCCT 1283
||..|.|||.|.||.|| || ||.|| ||| ||||||...||
RBAM_006750__ 1240 TATTTACAGGTCCCCGA--CAGCCTTCCGAAAAGA----GTGAGACAGCT 1283
BSNT_01089 1284 TGCGATCAAACTGACTCAGGATCACGACAATATGTTTGATAAGGTGAAAG 1333
||||..||.||||||.|.||||.|..|.||||||||.|||||.|.|||.|
RBAM_006750__ 1284 TGCGGACAGACTGACGCGGGATTATCATAATATGTTCGATAAAGCGAAGG 1333
BSNT_01089 1334 CGGTTGAGGACTATTTAGGGTCAAATGCGTTCACATATGAAACAGAAAAC 1383
||.|.|||||.|||.|.||.||....||.||..|.|||.|.|||.|..|.
RBAM_006750__ 1334 CGATCGAGGATTATCTCGGATCTTCCGCATTTTCGTATAATACACAGGAT 1383
BSNT_01089 1384 GTGACCATTCCTAAGAATGATGAAGATTATGTCGATCAATTTCTCTTTGA 1433
||..|..||||..||.|..||.|.||||||||||||||||||||.|||||
RBAM_006750__ 1384 GTTGCGGTTCCGGAGCACAATCAGGATTATGTCGATCAATTTCTGTTTGA 1433
BSNT_01089 1434 AACGAAAATGGGTTATTGTGATAACTTTTCTTCCGCCATGGTGGTGCTCT 1483
||||||||..||.|||||||||||||||||.||.||.||||..|||||..
RBAM_006750__ 1434 AACGAAAAGAGGATATTGTGATAACTTTTCATCGGCAATGGCTGTGCTGC 1483
BSNT_01089 1484 TGCGCTCGGCCGGCATTCCGGCCCGCTGGGTAAAGGGTTATACGTCCGGC 1533
|.|||||.||.||.|||||.|||||.|||||.|||||.|||||.||||||
RBAM_006750__ 1484 TCCGCTCTGCGGGAATTCCCGCCCGTTGGGTGAAGGGCTATACATCCGGC 1533
BSNT_01089 1534 GAATACAAAGAAGCAGGAAACAAAAATGGCAGCATCTACGAAGTGACAAA 1583
|||||.||||..|||||..||.|.||.|||..|||.||.|||||.|||||
RBAM_006750__ 1534 GAATATAAAGGGGCAGGCGACCATAACGGCCACATTTATGAAGTCACAAA 1583
BSNT_01089 1584 TAACAATGCCCATTCCTGGGTAGAGGTGTATTTCCCGGAACAGGGCTGGG 1633
.|||||.||||||||.||||||||.||||||||.||.||.||||||||||
RBAM_006750__ 1584 CAACAACGCCCATTCGTGGGTAGAAGTGTATTTTCCCGATCAGGGCTGGG 1633
BSNT_01089 1634 TTACATTTGAGCCGACTAAAGGGTTTACAAATCCGGCTGAATTTACTTCT 1683
|.||.|||||||||||.|||||.||.||.||||||.|.||.|||||.||
RBAM_006750__ 1634 TGACGTTTGAGCCGACAAAAGGCTTCACCAATCCGACGGAGTTTACGTC- 1682
BSNT_01089 1684 TCTGACACAAAGGACTCCGGCAGCGATAAAAGCAGCTCGCCGAAGAAAGC 1733
|| ||| ||||.||...||| .||
RBAM_006750__ 1683 ----------AG---------AGC---AAAATCATACCGC-------GGC 1703
BSNT_01089 1734 AAAAGA-----------------GAAA--------------CAGA-AAGA 1751
|||||| |||| |.|| |||.
RBAM_006750__ 1704 AAAAGACAGCGGAGGCTCAGCGGGAAATTCGGATGAACCGTCTGACAAGC 1753
BSNT_01089 1752 AG----AGAAAAAACAGCCGCAAAAAGAGGAAAAACAAAAGGAAAAGCGG 1797
|| ||.|||.|.|||||.|||||||||||||.| .|.||||||||
RBAM_006750__ 1754 AGCGTCAGGAAACAAAGCCGGAAAAAGAGGAAAAGC---CGAAAAAGCGG 1800
BSNT_01089 1798 GA--------------GCCAG-CTGTTTCTAA--------AAAGCCGTCC 1824
|| .|||| ||| ||| |||.||| |
RBAM_006750__ 1801 GATCACAGCGCGGCACCCCAGCCTG----TAATCCGCAACAAAACCG--C 1844
BSNT_01089 1825 GCTTCGCATACTAATGCCGGTGCGGGCTTGTATGCAGCGCTTGC---GGT 1871
| |||.|| .||.||.| |||||||||..|.|| .||
RBAM_006750__ 1845 G----GCACAC--------CTGTGGCC--GTATGCAGCCATCGCCATCGT 1880
BSNT_01089 1872 TCTTGCAGTCCTCTTGGTGGCAGCT-GTATTGCTGTATGTTTTCCGCTCG 1920
..||.||| ||.| ||.|||| || |..|.|||| .||||..||
RBAM_006750__ 1881 GATTTCAG-CCGC--GGCGGCA-CTCGCCTGGCTG------CTCCGGGCG 1920
BSNT_01089 1921 TTATGGATTCC---TGTTTTCACCGTGAG-GAAATTGAAGCGGCGCAACG 1966
...|||||||| .||| ||.| .|| .|.||||||||||||.|..|
RBAM_006750__ 1921 CGCTGGATTCCGCACGTT---ACAG-CAGCCAGATTGAAGCGGCGTACGG 1966
BSNT_01089 1967 ATCAGCACGCGTTTTTTGAGGCATATGACGCGCTTCTGAAACAACTGAAG 2016
||.|..|||..|||||.||.|||||||.||||||.||....||.|||||.
RBAM_006750__ 1967 ATGAAGACGTCTTTTTCGACGCATATGCCGCGCTGCTCCGCCAGCTGAAA 2016
BSNT_01089 2017 AGAAAAGGG--CTGCCGAAACGAGGCAGTGAAACGCTGCGTGATTATGCA 2064
.|||||||| |.|| |...|||.|.|.||||||||.||.||||.|||
RBAM_006750__ 2017 CGAAAAGGGTACAGC--AGGGGAGACGGAGAAACGCTCCGCGATTTTGC- 2063
BSNT_01089 2065 AAACGA--ATTGATGAAAAATACGA-------CATAGAA--GACATGTCA 2103
..||| .||| |||| ||||.|| ||||||||.
RBAM_006750__ 2064 -CGCGAGGGTTG---------ACGAGGCGCACCATACAAACGACATGTCC 2103
BSNT_01089 2104 AAGCTGACATTAAGCTATGAAAGGGCGCTT-TACAGAAATGAAGATTCTT 2152
.|||||||..|..|||||||..|||| ||| |||.|.|..||..||.|..
RBAM_006750__ 2104 GAGCTGACGCTGCGCTATGAGCGGGC-CTTATACCGCAGGGATAATGCCG 2152
BSNT_01089 2153 CGGCGCTATGGAATGATTCGAGAGAGTTATGGGAAAATTTAATTAAAAGA 2202
|||.|||.||||||||.|||.||.||||.|||||||||.|||||||||.|
RBAM_006750__ 2153 CGGAGCTTTGGAATGAATCGGGACAGTTGTGGGAAAATATAATTAAAACA 2202
BSNT_01089 2203 AGATGGTCTTGA 2214
||||.|
RBAM_006750__ 2203 AGATAG------ 2208
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