Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01108 and RBAM_006900

See Amino acid alignment / Visit BSNT_01108 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:48
# Commandline: needle
#    -asequence dna-align/BSNT_01108___purL.1.9828.seq
#    -bsequence dna-align/RBAM_006900___purL.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01108___purL-RBAM_006900___purL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01108___purL-RBAM_006900___purL.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01108___purL
# 2: RBAM_006900___purL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2230
# Identity:    1932/2230 (86.6%)
# Similarity:  1932/2230 (86.6%)
# Gaps:           2/2230 ( 0.1%)
# Score: 8456.0
# 
#
#=======================================

BSNT_01108___      1 ATGTCACTACTGCTTGAACCAAGTAAAGAACAAATAAAAGAAGAGAAACT     50
                     |||||.||||||||||||||||||||||||||||||||||||||||||||
RBAM_006900__      1 ATGTCGCTACTGCTTGAACCAAGTAAAGAACAAATAAAAGAAGAGAAACT     50

BSNT_01108___     51 GTATCAGCAAATGGGTGTCAGTGATGATGAGTTTGCATTGATAGAATCCA    100
                     .||||||||||||||||||||||||||.|||||.|||.|.||.|||||.|
RBAM_006900__     51 CTATCAGCAAATGGGTGTCAGTGATGACGAGTTCGCACTCATTGAATCTA    100

BSNT_01108___    101 TTCTTGGAAGATTGCCGAACTACACAGAAATCGGAATTTTTTCTGTCATG    150
                     ||.|.||||||||||||||||||||.||||||||.||||||||.||||||
RBAM_006900__    101 TTATCGGAAGATTGCCGAACTACACGGAAATCGGGATTTTTTCCGTCATG    150

BSNT_01108___    151 TGGTCTGAGCATTGCAGCTATAAAAACTCAAAGCCGATTCTGCGTAAATT    200
                     |||||.|||||.||||||||||||||||||||.|||.||.|.||.|||||
RBAM_006900__    151 TGGTCAGAGCACTGCAGCTATAAAAACTCAAAACCGGTTTTACGCAAATT    200

BSNT_01108___    201 CCCGACAAGCGGCGAGCGTGTGCTGCAGGGGCCGGGGGAAGGCGCCGGAA    250
                     ||||||.||||||||.||.|||||||||||.||.||.||||||||.||||
RBAM_006900__    201 CCCGACTAGCGGCGAACGCGTGCTGCAGGGTCCCGGAGAAGGCGCGGGAA    250

BSNT_01108___    251 TCGTTGATATCGGTGATAACCAAGCGGTTGTGTTCAAAATTGAATCACAT    300
                     |||||||.||||||||.||.||.|||||.|||||||||||||||||.|||
RBAM_006900__    251 TCGTTGACATCGGTGACAATCAGGCGGTCGTGTTCAAAATTGAATCTCAT    300

BSNT_01108___    301 AACCACCCATCAGCTCTCGAGCCTTACCAAGGCGCTGCGACTGGCGTAGG    350
                     |||||.||.|||||..|.|||||.||||||||.||||||||.||.||.||
RBAM_006900__    301 AACCATCCGTCAGCGATTGAGCCATACCAAGGTGCTGCGACGGGAGTGGG    350

BSNT_01108___    351 CGGAATTATCCGTGATGTATTCTCAATGGGTGCACGCCCAATCGCTGTAT    400
                     |||.||.||||||||.||.|||||||||||.||.||.||.||.|||||||
RBAM_006900__    351 CGGCATCATCCGTGACGTTTTCTCAATGGGCGCCCGTCCGATAGCTGTAT    400

BSNT_01108___    401 TGAACTCTCTTCGATTTGGTGAACTGACTTCACCACGCGTGAAGTACTTG    450
                     |.||||||||||||||||||||.||.||||||||.||.||||||||||||
RBAM_006900__    401 TAAACTCTCTTCGATTTGGTGAGCTCACTTCACCTCGTGTGAAGTACTTG    450

BSNT_01108___    451 TTTGAAGAAGTAGTAGCGGGTATCGCCGGATACGGCAACTGTATCGGCAT    500
                     ||||||||||||||.|||||.|||||.||||||||.||||||||||||||
RBAM_006900__    451 TTTGAAGAAGTAGTGGCGGGAATCGCGGGATACGGAAACTGTATCGGCAT    500

BSNT_01108___    501 CCCCACAGTCGGCGGAGAAGTGCAGTTTGACAGC-AGCTATGAAGGAAAT    549
                     .||.||.|||||||||||||||||||||||| || ||||||||.||.|||
RBAM_006900__    501 TCCGACGGTCGGCGGAGAAGTGCAGTTTGAC-GCAAGCTATGAGGGCAAT    549

BSNT_01108___    550 CCGCTCGTCAACGCAATGTGCGTCGGTTTAATCAATCATGAAGACATCAA    599
                     |||||.|||||.||||||||||||||.|||||..|||||.||||.||.||
RBAM_006900__    550 CCGCTTGTCAATGCAATGTGCGTCGGCTTAATTGATCATAAAGATATTAA    599

BSNT_01108___    600 AAAAGGCCAGGCAAAAGGTGTCGGCAACACAGTAATGTACGTAGGAGCGA    649
                     ||||||||||||.|||||||||||||||||.||.||||||||.||.||.|
RBAM_006900__    600 AAAAGGCCAGGCGAAAGGTGTCGGCAACACGGTCATGTACGTCGGCGCTA    649

BSNT_01108___    650 AAACTGGGCGTGACGGCATCCACGGCGCTACGTTTGCTTCTGAAGAAATG    699
                     ||||.||.||.||||||||.|||||||||||.||.||.||.|||||||||
RBAM_006900__    650 AAACGGGCCGCGACGGCATACACGGCGCTACTTTCGCATCAGAAGAAATG    699

BSNT_01108___    700 TCAGACTCGTCTGAAGAAAAGCGTTCTGCTGTCCAAGTCGGCGATCCGTT    749
                     |||||.||.|||||||||||.|||||.||.||.||.|||||||||||.||
RBAM_006900__    700 TCAGATTCATCTGAAGAAAAACGTTCCGCGGTGCAGGTCGGCGATCCTTT    749

BSNT_01108___    750 TATGGAGAAGCTTTTGCTTGAAGCATGTCTGGAAGTCATCCAATGCGACG    799
                     .|||||.||.|||.|.||.||||||||.||.|||||||||||||||||||
RBAM_006900__    750 CATGGAAAAACTTCTCCTGGAAGCATGCCTTGAAGTCATCCAATGCGACG    799

BSNT_01108___    800 CCTTAGTCGGCATTCAGGATATGGGAGCTGCCGGTTTAACAAGCTCAAGT    849
                     |||||||||||||||||||||||||.||.||.|||.|.|||||.||.|||
RBAM_006900__    800 CCTTAGTCGGCATTCAGGATATGGGGGCGGCAGGTCTGACAAGTTCGAGT    849

BSNT_01108___    850 GCAGAAATGGCAAGTAAAGCCGGTTCTGGCATTGAAATGAACCTTGACCT    899
                     ||.|||||||||||.||||||||.||.||||||||||||||||||||.||
RBAM_006900__    850 GCTGAAATGGCAAGCAAAGCCGGCTCAGGCATTGAAATGAACCTTGATCT    899

BSNT_01108___    900 GATTCCTCAGCGCGAAACAGGCATGACCGCGTATGAAATGATGCTTTCTG    949
                     .|||||.|||||.||||||||.||||||||.||.||||||||||||||.|
RBAM_006900__    900 CATTCCGCAGCGGGAAACAGGTATGACCGCTTACGAAATGATGCTTTCCG    949

BSNT_01108___    950 AATCACAAGAACGGATGCTTTTGGTTATTGAGCGCGGACGTGAGCAGGAA    999
                     |.||.||.|||||.||||||.|.||.|||||.|||||||||||.||||||
RBAM_006900__    950 AGTCTCAGGAACGCATGCTTCTCGTCATTGAACGCGGACGTGAACAGGAA    999

BSNT_01108___   1000 ATCATCGATATTTTTGACAAGTACGATCTTGAAGCGGTTTCTGTCGGACA   1049
                     ||..|||||||||||||.||.||.|||||||||||||||||.||.||.||
RBAM_006900__   1000 ATTGTCGATATTTTTGATAAATATGATCTTGAAGCGGTTTCCGTAGGTCA   1049

BSNT_01108___   1050 TGTGACAGATGATAAAATGCTTCGCCTGACACACAAAGGAGAGGTTGTGT   1099
                     |||.||.||||||||||||||.|||||....||.||.|||||||||||.|
RBAM_006900__   1050 TGTTACGGATGATAAAATGCTCCGCCTCCGCCATAACGGAGAGGTTGTTT   1099

BSNT_01108___   1100 GCGAGCTGCCTGTTGATGCCTTGGCAGAAGAAGCACCGGTTTACCATAAG   1149
                     |||||||.||.||.||.||..||||.|||||||||||.||.|||||.|||
RBAM_006900__   1100 GCGAGCTTCCGGTCGACGCGCTGGCGGAAGAAGCACCTGTATACCACAAG   1149

BSNT_01108___   1150 CCTTCTCAAGAGCCTGCTTACTATCGCGAGTTTTTGGAAACGGACGTTCA   1199
                     ||.||...|||.||.||.|||||.|||||||||..|||||||||.|.||.
RBAM_006900__   1150 CCGTCAGCAGAACCCGCGTACTACCGCGAGTTTCAGGAAACGGAAGCTCC   1199

BSNT_01108___   1200 GGCTCCGCAAATTGAAGATGCGAATGAAACGCTGAAGGCCCTTCTTCAGC   1249
                     .||.||..||.|..|||||||||..||.|||||....|||||.||.||||
RBAM_006900__   1200 CGCGCCTGAAGTAAAAGATGCGACAGAGACGCTTTTTGCCCTGCTGCAGC   1249

BSNT_01108___   1250 AGCCGACGATTGCGAGTAAAGAGTGGGTGTATGATCAGTATGACTACATG   1299
                     |||||||.||.||.||.||||||||||||||.|||||.||||||||||||
RBAM_006900__   1250 AGCCGACAATCGCCAGCAAAGAGTGGGTGTACGATCAATATGACTACATG   1299

BSNT_01108___   1300 GTGCGCACGAATACAGTTGTCGCTCCTGGGTCTGATGCTGGTGTTCTCAG   1349
                     ||||||||.|||||.||.||||||||.||.|||||.||.||.||.|||||
RBAM_006900__   1300 GTGCGCACAAATACGGTGGTCGCTCCGGGCTCTGACGCGGGAGTGCTCAG   1349

BSNT_01108___   1350 AATCCGCGGAACGAAAAAGGCGCTGGCGATGACGACAGACTGTAACGCGC   1399
                     |||||||||.||||||||.|||||||||||||||||.||.||||||||.|
RBAM_006900__   1350 AATCCGCGGCACGAAAAAAGCGCTGGCGATGACGACGGATTGTAACGCCC   1399

BSNT_01108___   1400 GTTATCTCTATCTTGATCCTGAAGTCGGAGGGAAAATTGCTGTCGCTGAA   1449
                     |||||.|.|||||||||||.||||..||.||.|||||.||.||.||.|||
RBAM_006900__   1400 GTTATTTATATCTTGATCCAGAAGAAGGCGGAAAAATCGCCGTTGCCGAA   1449

BSNT_01108___   1450 GCAGCGCGCAACATCATTTGCTCAGGCGCAGAACCGCTTGCGGTCACAGA   1499
                     ||.||||||||||||.|.|||||.|||||.|||||||||||||||||.||
RBAM_006900__   1450 GCGGCGCGCAACATCGTATGCTCCGGCGCCGAACCGCTTGCGGTCACGGA   1499

BSNT_01108___   1500 TAACCTTAACTTCGGAAACCCGGAGAAGCCGGAAATCTTCTGGCAGATCG   1549
                     |||.||.||.||||||||||||||.||.||.|||||.|||||||||||||
RBAM_006900__   1500 TAATCTGAATTTCGGAAACCCGGAAAAACCTGAAATTTTCTGGCAGATCG   1549

BSNT_01108___   1550 AAAAAGCGGCAGACGGCATAAGCGAAGCGTGCAATGTTCTCAGCACTCCG   1599
                     ||||||||||.||||||||.|||||.||||||||||||||||||||.||.
RBAM_006900__   1550 AAAAAGCGGCCGACGGCATCAGCGAGGCGTGCAATGTTCTCAGCACACCC   1599

BSNT_01108___   1600 GTTATCGGCGGTAACGTATCGCTTTATAACGAATCAAACGGCACGGCGAT   1649
                     ||.||||||||.||||||||.||||||||.|||||.|||||.||||||||
RBAM_006900__   1600 GTCATCGGCGGAAACGTATCACTTTATAATGAATCGAACGGAACGGCGAT   1649

BSNT_01108___   1650 CTATCCGACACCAGTTATCGGCATGGTCGGCCTAATTGAAGATACAGCGC   1699
                     |||.|||||.||.||||||||||||||||||.|||||||||||||.||.|
RBAM_006900__   1650 CTACCCGACGCCTGTTATCGGCATGGTCGGCTTAATTGAAGATACCGCTC   1699

BSNT_01108___   1700 ACATTACAACACAGCATTTCAAACAAGCAGGAGATCTCGTATACGTGATC   1749
                     |.|||||.||||||||||||||||||||.||.|||||.||||||||||||
RBAM_006900__   1700 ATATTACGACACAGCATTTCAAACAAGCGGGGGATCTTGTATACGTGATC   1749

BSNT_01108___   1750 GGCGAAACAAAACCAGAGTTTGCGGGAAGCGAGCTGCAAAAAATGACAGA   1799
                     ||||||||||||||.||||||||.||||||||.|||||||||||||||||
RBAM_006900__   1750 GGCGAAACAAAACCTGAGTTTGCCGGAAGCGAACTGCAAAAAATGACAGA   1799

BSNT_01108___   1800 AGGCCGCATTTACGGCAAAGCGCCGCAAATCGATCTTGATGTAGAGCTGT   1849
                     ||||||||||||||||||||||||||||||||||||||||.|||||||||
RBAM_006900__   1800 AGGCCGCATTTACGGCAAAGCGCCGCAAATCGATCTTGATATAGAGCTGT   1849

BSNT_01108___   1850 CTCGTCAAAAAGCACTGCTTGACGCGATTAAAAAAGGCTTCGTTCAATCT   1899
                     |.||.|||||||||.||||||||||||||||||||||||||||||||||.
RBAM_006900__   1850 CACGCCAAAAAGCATTGCTTGACGCGATTAAAAAAGGCTTCGTTCAATCA   1899

BSNT_01108___   1900 GCGCATGATGTGTCTGAAGGCGGCTTAGGCGTAGCGATTGCGGAAAGTGT   1949
                     ||||||||.||.||.||||||||||||||||||||||||||.|||||.||
RBAM_006900__   1900 GCGCATGACGTATCAGAAGGCGGCTTAGGCGTAGCGATTGCAGAAAGCGT   1949

BSNT_01108___   1950 CATGACGACGGAAAACCTTGGCGCTAATGTGACTGTAGAAGGGGAAGCGG   1999
                     ||||||||||||||||||||||||.||.||||||||||||||||||||||
RBAM_006900__   1950 CATGACGACGGAAAACCTTGGCGCCAACGTGACTGTAGAAGGGGAAGCGG   1999

BSNT_01108___   2000 CGTTATTATTCTCTGAATCTCAATCCCGCTTCGTCGTTTCAGTGAAAAAA   2049
                     |.||||||||||||||||||||||||||||||||||||||.|||||||||
RBAM_006900__   2000 CATTATTATTCTCTGAATCTCAATCCCGCTTCGTCGTTTCGGTGAAAAAA   2049

BSNT_01108___   2050 GAACATCAAGCTGCGTTTGAAGCAACTGTCAAAGATGCGGTTCATATTGG   2099
                     |||||.|||||.|||||||||||..||||....||||||||||||||.||
RBAM_006900__   2050 GAACACCAAGCGGCGTTTGAAGCGGCTGTGGCCGATGCGGTTCATATCGG   2099

BSNT_01108___   2100 TGAGGTAACAGCTGACGGAATTCTGGCGATTCAAAACCAAGACGGACAAC   2149
                     .||||||||.|||||||||.|||||||||||||||||||.||||||||||
RBAM_006900__   2100 CGAGGTAACGGCTGACGGACTTCTGGCGATTCAAAACCAGGACGGACAAC   2149

BSNT_01108___   2150 AAATGATTCATGCGCAAACGAAAGAGCTTGAACGCGTATGGAAAGGAGCT   2199
                     ||.||.||||.||||||||||||||.||.||.||||..||||||||||||
RBAM_006900__   2150 AATTGGTTCACGCGCAAACGAAAGAACTAGAGCGCGCGTGGAAAGGAGCT   2199

BSNT_01108___   2200 ATCCCATGCTTGCTGAAATCAAAGGCTTAA   2229
                     ||.|||||||||||||||||||||||.|.|
RBAM_006900__   2200 ATTCCATGCTTGCTGAAATCAAAGGCCTGA   2229


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