Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01124 and RBAM_006960

See Amino acid alignment / Visit BSNT_01124 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:49
# Commandline: needle
#    -asequence dna-align/BSNT_01124___yerA.1.9828.seq
#    -bsequence dna-align/RBAM_006960___yerA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01124___yerA-RBAM_006960___yerA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01124___yerA-RBAM_006960___yerA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01124___yerA
# 2: RBAM_006960___yerA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1757
# Identity:    1401/1757 (79.7%)
# Similarity:  1401/1757 (79.7%)
# Gaps:          28/1757 ( 1.6%)
# Score: 5555.5
# 
#
#=======================================

BSNT_01124___      1 ATGTCCGAACGCACCTTTAACTGGAAAAACAAAGACATCAGGGCACAGGT     50
                     |||||||||||.|||||||||||||||||.|||||||||||..||||||.
RBAM_006960__      1 ATGTCCGAACGTACCTTTAACTGGAAAAATAAAGACATCAGATCACAGGC     50

BSNT_01124___     51 TGATGTTGTAGACTCAAAGCTGCTTCCAACGCTCCTTTTACGGAATGCTC    100
                     .||||||||||||||||||||||||||||||||.|||||||||.||||||
RBAM_006960__     51 GGATGTTGTAGACTCAAAGCTGCTTCCAACGCTACTTTTACGGGATGCTC    100

BSNT_01124___    101 TCGTCTTAAATCCATATGTAAAACAATGGCTGAAAAAAAACATTTGGATT    150
                     ||||.||||||||.|.|.|||||||||||||||||||.||..|.||||||
RBAM_006960__    101 TCGTATTAAATCCTTTTTTAAAACAATGGCTGAAAAAGAATGTCTGGATT    150

BSNT_01124___    151 TATCAG-GACCGCATTGTTTATGTGGGTCATGAACTTCCGAATAGAGCCG    199
                     || |.| |||||.|||||.|||||.|||.||||.|||||..||..|||.|
RBAM_006960__    151 TA-CGGAGACCGAATTGTATATGTTGGTGATGAGCTTCCTGATGCAGCAG    199

BSNT_01124___    200 AAGAAATTCATACGATTGATTGTGAAGGAAAATACATTGTGCCAGGTTAT    249
                     |..|.||||||||.||..|||||||||||||||||||||||||||||||.
RBAM_006960__    200 AGCACATTCATACCATAAATTGTGAAGGAAAATACATTGTGCCAGGTTAC    249

BSNT_01124___    250 ATTGAACCGCACGCACATCCTTTTCAAATATATAATCCCCAAACACTGGC    299
                     |||||||||||..|||||||||||||||||||||||||||||||.||.||
RBAM_006960__    250 ATTGAACCGCATACACATCCTTTTCAAATATATAATCCCCAAACGCTCGC    299

BSNT_01124___    300 GGAATATGTGTCTCAATACGGAACAACGACATTTGTGAATGATAACTTAT    349
                     .||||||||||||||||.||||||||||||.|||||.|||||||||||.|
RBAM_006960__    300 CGAATATGTGTCTCAATTCGGAACAACGACGTTTGTTAATGATAACTTGT    349

BSNT_01124___    350 TTTTGCTTTTGCAAAGCGGAAAAAAGAAAGCGCTTACGATTTTGAATGAA    399
                     ||||.||||||||.|||||.|||||||||||||||||.||.|||.|.|||
RBAM_006960__    350 TTTTTCTTTTGCATAGCGGTAAAAAGAAAGCGCTTACTATATTGGAGGAA    399

BSNT_01124___    400 CTCAAAAAGCAGCCTGTCCAGTATTTTTGGTGGTCACGCTATGACCTCCA    449
                     ||.|||||.|||||.||.||.||.||.||||||||..|.|||||.||.||
RBAM_006960__    400 CTGAAAAAACAGCCGGTGCAATACTTCTGGTGGTCCAGATATGATCTGCA    449

BSNT_01124___    450 GACCGAGGTTCTGAACGAGGACCACGTCCTTCCATTTGACGTCAGAAAAC    499
                     |||.||.||.|||||.|||||.||..|.|||.|.|||||.|||.||||.|
RBAM_006960__    450 GACTGAAGTGCTGAATGAGGATCAGCTTCTTTCTTTTGATGTCCGAAAGC    499

BSNT_01124___    500 AGTGGATTGAACATCCGGATGTGATTCAAGGCGGAGAAATGACCGGATGG    549
                     |.||||||||.||.||||||||.|||||||||||||||.|||||||||||
RBAM_006960__    500 AATGGATTGAGCACCCGGATGTCATTCAAGGCGGAGAATTGACCGGATGG    549

BSNT_01124___    550 CCTCGCCTGGTAGATGGTGATGATTTAATGCTCCACTGCATGCAAGCTAC    599
                     ||.|||||..|.||.||.|||||..|.|||||.||.||||||||.||.||
RBAM_006960__    550 CCGCGCCTCATGGACGGCGATGACCTGATGCTTCATTGCATGCAGGCGAC    599

BSNT_01124___    600 AAAGAAACAGCGAAAACGCATTGAAGGGCATTTTCCCGGCGCATCTGATA    649
                     |||.||||.|||.||.||.||.|||||||||||||||||.||.|||||.|
RBAM_006960__    600 AAAAAAACTGCGCAAGCGGATAGAAGGGCATTTTCCCGGAGCCTCTGAAA    649

BSNT_01124___    650 AAACGCTTACAAAAATGAAGCTGTTCGGTGCGGATTGTGATCATGAAGCG    699
                     ||||.||.||.||.|||||.||||||||.||.||||..||.||.||.|||
RBAM_006960__    650 AAACACTGACGAAGATGAAACTGTTCGGAGCTGATTCCGACCACGAGGCG    699

BSNT_01124___    700 ATGACAGGTGATGAAGTGATGAGAAGGCTGGAACTGGGCTATTATGTTTC    749
                     ||||..||.|..||.|||||||||.||||.|||.|||||||.||||||||
RBAM_006960__    700 ATGAATGGCGGCGAGGTGATGAGACGGCTTGAATTGGGCTACTATGTTTC    749

BSNT_01124___    750 CCTTCGGA-ACTCTTCCATTCGCCCCGATGTAAGAAAAATCTTGCAAGAG    798
                     .| ||.|| |.||.|||||.|||||.|||.|.||||..||.|||||.||.
RBAM_006960__    750 GC-TCAGACATTCATCCATCCGCCCTGATTTGAGAACGATTTTGCAGGAT    798

BSNT_01124___    799 CTGCATGAGAAGGGCTTCCGCTATTATGACCACTTCTTTTACACGACAGA    848
                     ||.|||.|.||.||||||||..|||||||.||.|||||.||||||||.||
RBAM_006960__    799 CTTCATCAAAAAGGCTTCCGGCATTATGATCATTTCTTCTACACGACGGA    848

BSNT_01124___    849 TGGCGCAACCCCGAATTTCTATAAAGGCGGCATGACAAACGAGCTGAT--    896
                     |||.||.||.|||.||||.|||||||||||||||||.||.||..|.||  
RBAM_006960__    849 TGGAGCGACGCCGCATTTTTATAAAGGCGGCATGACGAATGAATTAATCA    898

BSNT_01124___    897 ---TCGCATTGCGTTAGAAGAAGGCGTACCTGCAATCGACGCCTACAATA    943
                        ||||.|||     ||.|||||.||.||.||.|||||.||||||||||
RBAM_006960__    899 AAATCGCTTTG-----GAGGAAGGAGTTCCGGCGATCGATGCCTACAATA    943

BSNT_01124___    944 TGGCATCATTTAATATCGCAAAGTATTACCAAATGGATGATTATTTAGGA    993
                     ||||.||.|||||||||||.||||||||.||.|||||.||.|.|.|.||.
RBAM_006960__    944 TGGCCTCCTTTAATATCGCGAAGTATTATCAGATGGACGACTTTCTCGGT    993

BSNT_01124___    994 GTTGTCGGACCGGGCAGACTGGCATCGCTCAACATACTGGAAGCTCCGTT   1043
                     ||.|||||.|||||..|.||.||.||..|.|||||.||.||.|..|||.|
RBAM_006960__    994 GTGGTCGGTCCGGGACGGCTTGCTTCATTGAACATTCTCGATGACCCGAT   1043

BSNT_01124___   1044 AAATCCGAATCCCGTGACTGTTCTGTCAAAAGGGACCATTCTGCGTGAAG   1093
                     .||||||.|.||.||.||.||..|.||.|||||.|.|.|.|||.|.||||
RBAM_006960__   1044 GAATCCGGACCCGGTCACGGTGATCTCCAAAGGCATCCTGCTGAGGGAAG   1093

BSNT_01124___   1094 ACGGCTGTGATTTGAAGGCGTTTACAAAGACGGACTGGCACAAAGGCGGT   1143
                     |||||.|..||.||||.|||||||||.|.|||||.|||.|.||.||||||
RBAM_006960__   1094 ACGGCCGAAATATGAATGCGTTTACAGAAACGGATTGGAAAAAGGGCGGT   1143

BSNT_01124___   1144 CTTGTCTCGCTTGAACTTTCATATGATATGACGATGGATGACTTGCAGTT   1193
                     ||||||.|.|||||.||||||||||||||||||||||||||.||.|||||
RBAM_006960__   1144 CTTGTCCCTCTTGAGCTTTCATATGATATGACGATGGATGATTTACAGTT   1193

BSNT_01124___   1194 TTCTATGCCGATGGGCGTGAAAATGCGGAATGCGGTTATTATGGAGCCCT   1243
                     |||.|||||||||||.||||..|||||.||.|||||.|||||||||||.|
RBAM_006960__   1194 TTCAATGCCGATGGGTGTGACCATGCGCAACGCGGTCATTATGGAGCCGT   1243

BSNT_01124___   1244 ATATGATTGAGATTGACAATTCGATGGAACAGCTCTCGTTTGACCATGAT   1293
                     |||||||||.||||||.|||||..|.||.|||||.||.|||||.||||||
RBAM_006960__   1244 ATATGATTGCGATTGATAATTCTGTTGACCAGCTTTCTTTTGATCATGAT   1293

BSNT_01124___   1294 GAAAGTTATTTGACGATGCTCGACAGACACGGGAAATGGCGCGTCAATAC   1343
                     |||.|.|||.|.|||.|.|||||.|..||.||.||||||||.||||||||
RBAM_006960__   1294 GAATGCTATCTCACGCTTCTCGATAAGCATGGAAAATGGCGGGTCAATAC   1343

BSNT_01124___   1344 GATGATAAAAGGGTTTGCC--TCAAGCGTGCAGGGATTTGTAAGCTCCTT   1391
                     .|||.|.|||||.||||||  ||  |.||||||||.|||||.||.||||.
RBAM_006960__   1344 AATGCTGAAAGGTTTTGCCGATC--GGGTGCAGGGCTTTGTCAGTTCCTA   1391

BSNT_01124___   1392 TACGACGACGGGCGACATTGTCGCGATTGGAAAAAATAAAGCGGATATGC   1441
                     .|||||.||.||.||.|||.||||....|||||||||||||..|||||.|
RBAM_006960__   1392 CACGACAACCGGAGATATTATCGCTGCCGGAAAAAATAAAGAAGATATCC   1441

BSNT_01124___   1442 TGCTCGCTTTCGCCCGCATGAAAGAAATCGGAGGAGGAATTGTTTTAGCG   1491
                     |||||||||||.|.||.||||||||||||||.||.|||||.||..|.||.
RBAM_006960__   1442 TGCTCGCTTTCTCACGGATGAAAGAAATCGGCGGCGGAATCGTGCTTGCC   1491

BSNT_01124___   1492 GAGAACAGAAACATTCTGCATGAAATCCCGCTTGCGCTGTGCGGCTGCGC   1541
                     ||.|||.|.||.|||||.|||||.||.||.||.||..|...|||.|..||
RBAM_006960__   1492 GAAAACGGGAAGATTCTTCATGAGATTCCCCTCGCCTTAAACGGTTCTGC   1541

BSNT_01124___   1542 CTCTTCGGAAGCGTATGAAGACGTGCTTGAGAAGGAACAAAAGCTGAGAG   1591
                     .||..||||...|||||||||.|||||||||||.||.|||||.||||| |
RBAM_006960__   1542 ATCCGCGGAGAAGTATGAAGAAGTGCTTGAGAAAGAGCAAAAACTGAG-G   1590

BSNT_01124___   1592 ATCTTTTGACTGAAAGA----GGCTA-TGAGTTTTGCGATCCTATCTATA   1636
                     ||.||   .|||.|.||    ||||| .|| ||.||||||||.|||||||
RBAM_006960__   1591 ATGTT---GCTGGAGGAGCGGGGCTACCGA-TTCTGCGATCCGATCTATA   1636

BSNT_01124___   1637 CGCTGCTCTTTTTGCAAAGTACGCACCTTCCGTATATACGCATTACGCCA   1686
                     ||||||||||||||||.||.||.|||||.||.|||||.|||||||||||.
RBAM_006960__   1637 CGCTGCTCTTTTTGCAGAGCACACACCTGCCTTATATCCGCATTACGCCG   1686

BSNT_01124___   1687 AGAGGAATCTTCGACGTCATGAAAAAAACTGTACTCTTTCCATCGATAAT   1736
                     ||||||||.||.|||||.||||||||||||||||||||||||||||||||
RBAM_006960__   1687 AGAGGAATATTTGACGTGATGAAAAAAACTGTACTCTTTCCATCGATAAT   1736

BSNT_01124___   1737 GCGTTAA   1743
                     |||||||
RBAM_006960__   1737 GCGTTAA   1743


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