Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01132 and RBAM_007010

See Amino acid alignment / Visit BSNT_01132 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:49
# Commandline: needle
#    -asequence dna-align/BSNT_01132___pcrA.1.9828.seq
#    -bsequence dna-align/RBAM_007010___pcrA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01132___pcrA-RBAM_007010___pcrA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01132___pcrA-RBAM_007010___pcrA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01132___pcrA
# 2: RBAM_007010___pcrA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2230
# Identity:    1827/2230 (81.9%)
# Similarity:  1827/2230 (81.9%)
# Gaps:          20/2230 ( 0.9%)
# Score: 7555.0
# 
#
#=======================================

BSNT_01132___      1 TTGAATTATATTAGCAATCAATTACTAAGCGGTTTAAACCCCGTTCAGCA     50
                     .|||||||.|||||||||||||||.|||||||.|||||.|||||||||||
RBAM_007010__      1 ATGAATTACATTAGCAATCAATTATTAAGCGGATTAAATCCCGTTCAGCA     50

BSNT_01132___     51 GGAAGCAGTCAAAACAACGGACGGGCCTCTTTTGCTGATGGCGGGAGCGG    100
                     ||||||.|||||.||.||||||||.||.||..|.|||||||||||.||||
RBAM_007010__     51 GGAAGCGGTCAAGACGACGGACGGTCCCCTGCTTCTGATGGCGGGCGCGG    100

BSNT_01132___    101 GAAGCGGAAAGACGCGTGTCCTGACACACAGAATTGCTTATTTAATGGCA    150
                     ||||||||||.||.|||||.|||||.||||||||.||.||.||||||||.
RBAM_007010__    101 GAAGCGGAAAAACACGTGTGCTGACGCACAGAATCGCATACTTAATGGCG    150

BSNT_01132___    151 GAGAAGCATGTGGCGCCGTGGAACATTCTGGCGATCACATTTACAAATAA    200
                     ||.||.||.||||||||.|||||||||||||||||.||||||||||||||
RBAM_007010__    151 GAAAAACACGTGGCGCCATGGAACATTCTGGCGATTACATTTACAAATAA    200

BSNT_01132___    201 AGCGGCACGCGAAATGAAAGAACGTGTGGAAAGCATCCTTGGACCCGGCG    250
                     |||.||..|.||||||||.||.||.|||||.|||||.||.||||||||||
RBAM_007010__    201 AGCCGCCAGAGAAATGAAGGAGCGGGTGGAGAGCATTCTCGGACCCGGCG    250

BSNT_01132___    251 CGGACGATATCTGGATTTCCACATTCCACAGCATGTGCGTGCGGATCTTG    300
                     ||||.||.||||||||||||||.||||||||||||||.||||||||..||
RBAM_007010__    251 CGGATGAAATCTGGATTTCCACCTTCCACAGCATGTGTGTGCGGATTCTG    300

BSNT_01132___    301 CGCAGAGATATCGACCGGATTGGGATCAACCGAAATTTCTCCATCCTTGA    350
                     |||||.|||||.|||.|.||.||.||||||||||||||||||||.|||||
RBAM_007010__    301 CGCAGGGATATTGACAGAATCGGCATCAACCGAAATTTCTCCATTCTTGA    350

BSNT_01132___    351 TACGGGTGACCAGCTTTCAGTGATCAAGGGGATTTTGAAGGAGCGCAATC    400
                     |||||.|||.||||||||.||.||.||.||||||.||||.|||||.|||.
RBAM_007010__    351 TACGGCTGATCAGCTTTCCGTTATTAAAGGGATTCTGAAAGAGCGGAATA    400

BSNT_01132___    401 TTGATCCGAAGAAGTTTGACCCGAGAAGCATCCTCGGTACGATCAGCAGT    450
                     |.||||||||.||||||||.||||||||.||..|.||..|.||||||||.
RBAM_007010__    401 TCGATCCGAAAAAGTTTGATCCGAGAAGTATTTTAGGCTCCATCAGCAGC    450

BSNT_01132___    451 GCGAAAAACGAATTGACCGAACCGGAGGAATTCTCTAAAGTTGCTGGCGG    500
                     ||.||||||||..|||.||||||.|||||||||.|.|||...||.|||||
RBAM_007010__    451 GCAAAAAACGAGCTGATCGAACCTGAGGAATTCGCAAAAACGGCCGGCGG    500

BSNT_01132___    501 CTACTACGATCAGGTGGTCAGCGATGTATATGCTGATTATCAGAAGAAGC    550
                     |||||||||||||||....||.||.||.|||.|.|||||||||||.||.|
RBAM_007010__    501 CTACTACGATCAGGTCACGAGTGACGTGTATACCGATTATCAGAAAAAAC    550

BSNT_01132___    551 TATTGAAAAACCAGTCGCTCGATTTTGACGATTTGATTATGACGACGATT    600
                     |..||||||||||.|||||.||||||||.|||||.||.||||||||||||
RBAM_007010__    551 TGCTGAAAAACCAATCGCTTGATTTTGATGATTTAATCATGACGACGATT    600

BSNT_01132___    601 AAACTGTTTGACCGAGTGCCTGAAGTGCTTGAATTTTATCAGCGCAAATT    650
                     ||.||.||.||.||.|||||.|||||||||||.|||||||||||||||||
RBAM_007010__    601 AAGCTTTTCGAGCGTGTGCCGGAAGTGCTTGAGTTTTATCAGCGCAAATT    650

BSNT_01132___    651 CCAGTACATCCATGTTGATGAGTATCAGGATACGAACAGGGCGCAATACA    700
                     |||||||||.||.||.||.||||||||||||||||||||||||||||||.
RBAM_007010__    651 CCAGTACATTCACGTAGACGAGTATCAGGATACGAACAGGGCGCAATACC    700

BSNT_01132___    701 TGCTCGTTAAGCAGCTTGCCGAGCGTTTCCAGAACCTTTGCGTTGTCGGG    750
                     ||||.||.|||||||||||.|..|||.|..|.||..|.|||||.|||||.
RBAM_007010__    701 TGCTTGTGAAGCAGCTTGCGGCCCGTCTTGAAAATATCTGCGTCGTCGGT    750

BSNT_01132___    751 GATTCTGATCAGTCAATCTACAGATGGCGCGGCGCGGATATCACCAACAT    800
                     ||.||.||.|||||.||.||||||||||||||.|||||||||.|.||.||
RBAM_007010__    751 GACTCCGACCAGTCCATTTACAGATGGCGCGGGGCGGATATCGCGAATAT    800

BSNT_01132___    801 CCTTTCATTTGAAAAAGATTATCCGAATGCAAGCGTGATTTTGCTAGAAC    850
                     ||||||.|||||||||||||||||||..||||.|||||||.||||.||.|
RBAM_007010__    801 CCTTTCCTTTGAAAAAGATTATCCGAGCGCAAACGTGATTCTGCTCGAGC    850

BSNT_01132___    851 AAAACTATCGTTCAACGAAACGGATTTTGCGTGCGGCTAACGAGGTCATC    900
                     |||||||.||.|||||.||.||||||.|||..|||||||||||.||.|||
RBAM_007010__    851 AAAACTACCGCTCAACAAAGCGGATTCTGCAGGCGGCTAACGAAGTGATC    900

BSNT_01132___    901 AAAAACAACTCTAACCGCAAACCGAAAAATTTGTGGACGGAAAACGATGA    950
                     |||||||||||.||||||||.||||||||..|||||||||||||.||.||
RBAM_007010__    901 AAAAACAACTCAAACCGCAAGCCGAAAAACCTGTGGACGGAAAATGACGA    950

BSNT_01132___    951 AGGCATAAAAATTTCCTATTATCGCGGTGATAATGAATTCGGAGAAGGAC   1000
                     ||||||.||..||||.|||||..||||.||.|||||||||||.|||||.|
RBAM_007010__    951 AGGCATCAAGCTTTCTTATTACAGCGGCGACAATGAATTCGGCGAAGGCC   1000

BSNT_01132___   1001 AGTTTGTGGCCGGTAAAATTCATCAGCTTCACAGCTCAGGCAAGCGGAAG   1050
                     |.||.||.||.||.||||||.|..||||.||||||||.|||..|||||||
RBAM_007010__   1001 AATTCGTCGCGGGCAAAATTTACGAGCTGCACAGCTCGGGCCGGCGGAAG   1050

BSNT_01132___   1051 CTGTCTGATATCGCCATATTATACCGGACAAACGCGCAGTCCCGTGTGAT   1100
                     ||.||.||||||||.||.|||||||||||||||||.|||||.||.||.||
RBAM_007010__   1051 CTTTCCGATATCGCGATTTTATACCGGACAAACGCCCAGTCGCGCGTCAT   1100

BSNT_01132___   1101 TGAGGAAACGCTTCTCAAAGCGGGCTTGAACTATAACATTGTCGGCGGCA   1150
                     |||||||||.|||.|.|||.|.||..|||||||.||.||.||||||||.|
RBAM_007010__   1101 TGAGGAAACCCTTTTAAAATCCGGACTGAACTACAATATCGTCGGCGGAA   1150

BSNT_01132___   1151 CAAAGTTCTATGACAGAAAAGAAATTAAAGACATTCTTGCGTACCTGCGC   1200
                     |.||||||||.|||||.||||||||||||||||||||.||.|||||||||
RBAM_007010__   1151 CCAAGTTCTACGACAGGAAAGAAATTAAAGACATTCTCGCATACCTGCGC   1200

BSNT_01132___   1201 CTCGTATCCAATCCGGATGACGATATCAGTTTCACGCGCATTGTCAATGT   1250
                     ||.||.||.||.|||||.|||||.||||||||.|||||.||.||||||||
RBAM_007010__   1201 CTTGTGTCAAACCCGGACGACGACATCAGTTTTACGCGGATCGTCAATGT   1250

BSNT_01132___   1251 GCCGAAGCGCGGAGTCGGCGCGACATCACTTGAAAAAATCGCTTCGTATG   1300
                     |||||||||.||.||||||||.||.||.||.||||||||||||||.||||
RBAM_007010__   1251 GCCGAAGCGGGGCGTCGGCGCCACTTCGCTAGAAAAAATCGCTTCATATG   1300

BSNT_01132___   1301 CGGCCATAAACGGCTTGTCCTTTTTCCAAGCGATTCAGCAGGTTGATTTT   1350
                     ||||.||.|||||..||||..|.|||||.|||||..|.|||||||||||.
RBAM_007010__   1301 CGGCGATGAACGGAATGTCAATGTTCCAGGCGATCAAACAGGTTGATTTC   1350

BSNT_01132___   1351 ATCGGCGTCAGTGCCAAAGCGGCAAACGCGCTTGACAGCTTTAGACAGAT   1400
                     |||||||||||.||.|||||||||||||||||||||.|||||.|...|||
RBAM_007010__   1351 ATCGGCGTCAGCGCGAAAGCGGCAAACGCGCTTGACGGCTTTGGCGCGAT   1400

BSNT_01132___   1401 GATTGAAAACCTGACCAATATGCAGGATTACTTATCCATTACAGAGCTGA   1450
                     |||||||||.|||||.||.||||||||||||.|.||||||||.||.||.|
RBAM_007010__   1401 GATTGAAAATCTGACGAACATGCAGGATTACCTGTCCATTACGGAACTCA   1450

BSNT_01132___   1451 CAGAAGAAATTCTTGATAAGACGGAATACAGAGAAATGCTGAAGGCTGAG   1500
                     |.|||||||||||.||.||.||||||||||||||||||||||||||.||.
RBAM_007010__   1451 CGGAAGAAATTCTCGAGAAAACGGAATACAGAGAAATGCTGAAGGCCGAA   1500

BSNT_01132___   1501 AAATCGATCGAAGCCCAAAGCCGTTTAGAAAATATCGACGAGTTCCTGTC   1550
                     |||||.||||||||||||||||||.|.|||||||||||||||||.||.||
RBAM_007010__   1501 AAATCAATCGAAGCCCAAAGCCGTCTTGAAAATATCGACGAGTTTCTTTC   1550

BSNT_01132___   1551 TGTTACGAAAAACTTTGAACAGAAAAGTGAAGACAAGACACTCGTTGCGT   1600
                     .||.|||||||||||.|||||.|||||.|||||||||.|.|||||.||||
RBAM_007010__   1551 CGTGACGAAAAACTTCGAACAAAAAAGCGAAGACAAGTCTCTCGTCGCGT   1600

BSNT_01132___   1601 TCCTGACAGACTTGGCATTGATCGCAGATATTGATCAGCTCGATCAGCAG   1650
                     |.|||||.||.|||||..||||.||.||||||||.||||||||.|||.||
RBAM_007010__   1601 TTCTGACTGATTTGGCGCTGATTGCGGATATTGACCAGCTCGACCAGAAG   1650

BSNT_01132___   1651 GAGGAAGAGTCAGGCGGCAAGGATGCGATCACCCTGATGACACTGCACGC   1700
                     ||.||.||.||||||||.||||||||..||||..|.||||||||||||||
RBAM_007010__   1651 GAAGAGGAATCAGGCGGAAAGGATGCCGTCACTTTAATGACACTGCACGC   1700

BSNT_01132___   1701 CGCGAAAGGACTGGAGTTCCCGGTTGTTTTCTTGATGGGGCTTGAAGAAG   1750
                     |||.||.||.||.||.||.||.||.||.|||||.|||||..|.|||||||
RBAM_007010__   1701 CGCTAAGGGGCTTGAATTTCCTGTCGTGTTCTTAATGGGCATGGAAGAAG   1750

BSNT_01132___   1751 GCGTCTTCCCGCACAGCCGTTCACTCATGGAGGAAGCGGAAATGGAAGAA   1800
                     ||||.||||||||||||||.||.||.|||||.|||||.||.|||||||||
RBAM_007010__   1751 GCGTGTTCCCGCACAGCCGCTCCCTGATGGAAGAAGCCGAGATGGAAGAA   1800

BSNT_01132___   1801 GAACGCCGCCTTGCGTACGTTGGGATTACAAGGGCTGAACAGGAGCTTTA   1850
                     ||||||.|.||.||.||.||.||.|||||.|||||.|||.|.||..|.||
RBAM_007010__   1801 GAACGCAGGCTCGCATATGTAGGCATTACGAGGGCGGAAGAAGAATTGTA   1850

BSNT_01132___   1851 TCTGACCAATGCTAAAATGCGCACCTTGTTTGGCCGGACAAATATGAACC   1900
                     |.|.||.|||||.||||||||||||||.||.|||||.||.||||||||.|
RBAM_007010__   1851 TTTAACGAATGCCAAAATGCGCACCTTATTCGGCCGCACCAATATGAATC   1900

BSNT_01132___   1901 CGGAATCTCGCTTCATTGCTGAAATACCGGATGATTTATTGGAAAACCTA   1950
                     |||||||.|||||.||....||||||||.|..|||||||||||.||||||
RBAM_007010__   1901 CGGAATCCCGCTTTATCAGGGAAATACCTGGCGATTTATTGGAGAACCTA   1950

BSNT_01132___   1951 AATGAGAAAAAAGAAACGAGAGCGACGTC---TGC-------GAGAAAAA   1990
                     ||||||||.|   ||||       ||.||   |||       .||||||.
RBAM_007010__   1951 AATGAGAAGA---AAAC-------ACCTCGCATGCAGCCGGGAAGAAAAG   1990

BSNT_01132___   1991 TGCAGCCGAGACGCGGCCCTGTTTCACGCCCCGTATCCTACGCCAGCAAA   2040
                     |||||||.|.||||||.||.||.||.||.|||||.|||||.||.|.||||
RBAM_007010__   1991 TGCAGCCAAAACGCGGGCCCGTATCCCGTCCCGTTTCCTATGCGAACAAA   2040

BSNT_01132___   2041 ACAGGCGGCGACACCTTAAACTGGGCAGTCGGAGATAAGGCGGGCCATAA   2090
                     ||||||||||||.|..|.|.||||||.|||||.|||||.|||||||||||
RBAM_007010__   2041 ACAGGCGGCGACTCGCTCAGCTGGGCGGTCGGCGATAAAGCGGGCCATAA   2090

BSNT_01132___   2091 AAAATGGGGAACAGGAACTGTCGTCAGCGTGAAAGGCGAAGGAGAAGGGA   2140
                     |||||||||.||.|||||.||.||||||||.|||||.|||||.|||.|.|
RBAM_007010__   2091 AAAATGGGGCACCGGAACGGTTGTCAGCGTAAAAGGAGAAGGCGAAAGCA   2140

BSNT_01132___   2141 CGGAGCTCGATATTGCCTTCCCGAGCCCTGTTGGCGTGAAACGCCTGTTA   2190
                     |.|||||.|||||.||.|||||||||||.||.||||||||.||.|||.|.
RBAM_007010__   2141 CCGAGCTTGATATCGCATTCCCGAGCCCAGTCGGCGTGAAGCGTCTGCTT   2190

BSNT_01132___   2191 GCAGCATTTGCTCCTATTGAAAAGCAGTAA   2220
                     ||.||.|||||.||.|||||||||||||||
RBAM_007010__   2191 GCCGCTTTTGCGCCGATTGAAAAGCAGTAA   2220


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