Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_01135 and RBAM_007030

See Amino acid alignment / Visit BSNT_01135 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:50
# Commandline: needle
#    -asequence dna-align/BSNT_01135___yerH.1.9828.seq
#    -bsequence dna-align/RBAM_007030___yerH.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01135___yerH-RBAM_007030___yerH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01135___yerH-RBAM_007030___yerH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01135___yerH
# 2: RBAM_007030___yerH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1205
# Identity:     940/1205 (78.0%)
# Similarity:   940/1205 (78.0%)
# Gaps:          22/1205 ( 1.8%)
# Score: 3631.5
# 
#
#=======================================

BSNT_01135___      1 TTGAAAAAGACGTTGGCATTGG------CGGCAACGGCGGCAGTATTAAT     44
                     ||||||||||.|||||||||||      |||||||||||||||||.|.||
RBAM_007030__      1 TTGAAAAAGATGTTGGCATTGGCGGCGACGGCAACGGCGGCAGTACTCAT     50

BSNT_01135___     45 GCTGTCTGCCTGCTCGTCAGGTTTTGGGGGGGAGAAGGAGGAAGAGATTA     94
                     ||||||.|||||.|||.|..||||.||||||.|.||.|||||||||||.|
RBAM_007030__     51 GCTGTCGGCCTGTTCGCCGAGTTTCGGGGGGAACAAAGAGGAAGAGATCA    100

BSNT_01135___     95 CGCAAAAGACGGCGAAATCGTCAGAAAAAGCGATTGTCCCGAAATATAAT    144
                     ||||.||.|||||.||.||.||.|||||||||||..|.||||||||||||
RBAM_007030__    101 CGCAGAAAACGGCAAAGTCTTCTGAAAAAGCGATCATACCGAAATATAAT    150

BSNT_01135___    145 ATCTCTGACTCCTATTACAAAATGGTGCTGCCGTTTAAGGCAGGCAAAGC    194
                     ||||||||.|||||.||.|||||||||||.|||||||||||.||.|||||
RBAM_007030__    151 ATCTCTGATTCCTACTATAAAATGGTGCTTCCGTTTAAGGCCGGAAAAGC    200

BSNT_01135___    195 GCGCGGCTTAACAACGGAACAGCTGAATACTAGGCTGGACATTGACGAGT    244
                     |||||||.|.||..||||.|.||||||.||.|||||||||||.||.||.|
RBAM_007030__    201 GCGCGGCCTGACCGCGGACCGGCTGAACACGAGGCTGGACATCGATGAAT    250

BSNT_01135___    245 TTGAAACAGGGCTGATGCGTCTTGCCCAAGATTCTTTCTCGACTGACGAT    294
                     |.||.||.||.||||||||.||.||.|||||..|.|||.||||.||.||.
RBAM_007030__    251 TCGAGACGGGTCTGATGCGGCTCGCTCAAGACACGTTCCCGACGGATGAC    300

BSNT_01135___    295 TATCTGTTCCAAGAAGGACAATATTTAGATGAGGATACAGTATTAAGCTG    344
                     |||.|||..||.|||||.||.||||||||||||||.||.|||.|.|||||
RBAM_007030__    301 TATTTGTATCAGGAAGGCCAGTATTTAGATGAGGACACGGTACTCAGCTG    350

BSNT_01135___    345 GCTGGCACGGAAAAAAACGGGCTCTGATTTGAAAAAAGCCGAAAAA-GAA    393
                     |||.|..||.||||||...|||..||||.|| ||||||.||||||| |.|
RBAM_007030__    351 GCTTGACCGCAAAAAAGAAGGCAGTGATCTG-AAAAAGGCGAAAAAGGCA    399

BSNT_01135___    394 GATAAAAACTTCAAAAATGAAGGCTTGAACCCGGCGCTCCCGAGCTCTGG    443
                     |||...||.||..|.|||...|||||.||.||.|.|||.||.|||||.||
RBAM_007030__    400 GATTCCAATTTTCAGAATCTCGGCTTAAATCCCGTGCTGCCAAGCTCGGG    449

BSNT_01135___    444 TTCAACAGAAGAAAAGAACGAAAGCAGCCCGATTTATTTAGCATCCATGC    493
                     .||..||.||||.||.||.||||.||||||||||||.|||||.|||||||
RBAM_007030__    450 ATCGGCAAAAGAGAAAAATGAAAACAGCCCGATTTACTTAGCGTCCATGC    499

BSNT_01135___    494 TTGAGCATGATTATTTAGTCAGAAAAGATAAGAATTCTATCCAGCTTGGC    543
                     |||||||.|||||.|||||.|||||||||||.|||||.||||||||||||
RBAM_007030__    500 TTGAGCAGGATTACTTAGTAAGAAAAGATAAAAATTCCATCCAGCTTGGC    549

BSNT_01135___    544 GGCGTCATGATCGGACTGGCGTTAAACTCCGTGTATTACTATCGTGAAAA    593
                     ||..||||||||||.||.||..|.|||||.||.||.||.||.||||||||
RBAM_007030__    550 GGTATCATGATCGGTCTCGCTCTCAACTCTGTATACTATTACCGTGAAAA    599

BSNT_01135___    594 AACTGGCGACCCGCAAAAAGAAGTGGAGATTAAGGACAGCACGCTCCGCC    643
                     .||.||.||.|||||..|.|||||||||.|.|..||||..|||.|||| |
RBAM_007030__    600 CACAGGTGATCCGCAGCAGGAAGTGGAGCTCAGTGACAAAACGATCCG-C    648

BSNT_01135___    644 AG-CAGGGAGAAAAAATTGCACAGGAGGTTATTAACCGCCTCCGCAAAAA    692
                     || ||.||.|||.||||.||.|||||.||..||||||||||.||.||||.
RBAM_007030__    649 AGCCACGGTGAAGAAATCGCCCAGGAAGTCGTTAACCGCCTTCGGAAAAT    698

BSNT_01135___    693 AGATAACTTGAAGAATGTGCCGATTACCGTCGCGCTCTACAAGCAGGCGT    742
                     .||||||.||||.||||||||||||||||||||.||.||.||.||.|||.
RBAM_007030__    699 GGATAACCTGAAAAATGTGCCGATTACCGTCGCCCTTTATAAACAAGCGC    748

BSNT_01135___    743 CAAAAACATCGATTGTGCCGGGGAACTTCATCGCCAAAACAGAGGTCAAA    792
                     |.||||||||.||.||.||||||||.|.|||.||.||||||||.||||||
RBAM_007030__    749 CGAAAACATCAATCGTACCGGGGAATTACATTGCAAAAACAGAAGTCAAA    798

BSNT_01135___    793 GCAGGCTCTACTGAT-----ATCTCAAATTGGGATGACATCAATGAAAAA    837
                     ||.|||||     ||     ||.|||||.||||||||..||||.|||||.
RBAM_007030__    799 GCCGGCTC-----ATCCACCATTTCAAACTGGGATGATGTCAAAGAAAAG    843

BSNT_01135___    838 TATGTATTCTATCCGGCAGATACAACCACAGCAGAAAAATACCCGGATGA    887
                     ||.||.|||||||||||.||||||..|||.|||.|.||||||||.|||||
RBAM_007030__    844 TACGTCTTCTATCCGGCGGATACAGACACGGCAAAGAAATACCCTGATGA    893

BSNT_01135___    888 CACCGAGGTCTTTAAGCGGTTCAAAAACTCAATTGA-AGAATATTTCCCG    936
                     ..||||.||.|||||.||.|||||||||.|.||.|| || .||.||||||
RBAM_007030__    894 TTCCGAAGTATTTAAACGCTTCAAAAACGCCATCGACAG-CTACTTCCCG    942

BSNT_01135___    937 AACTATACAGGCGTTGTCGGTACAGCGCTGTATGAAAATGATGAAATGAA    986
                     ||.||.||.||.||.|||||.||.||..||||.|||||.||||||||||.
RBAM_007030__    943 AATTACACCGGAGTCGTCGGAACGGCAATGTACGAAAACGATGAAATGAG    992

BSNT_01135___    987 GAAAATGAAGATTGACATACCAATGCAATTCTATGGAAAAAGTGAAGTTG   1036
                     .||||||||||||||.||.||.||||||||.||.||.|||||.|||||..
RBAM_007030__    993 AAAAATGAAGATTGAAATCCCGATGCAATTTTACGGGAAAAGCGAAGTCA   1042

BSNT_01135___   1037 TCGCGTTTACCCAGTTCTTAACGGGTGAAGTGATGGACTACTACTCTAAA   1086
                     ||||.||||||||.|.||||||.|||||..|||||||.||.||.||.|||
RBAM_007030__   1043 TCGCCTTTACCCAATACTTAACAGGTGAGCTGATGGATTATTATTCAAAA   1092

BSNT_01135___   1087 GGCTCAGTTGATGTCGAAGTCAATATCACGTCCTCAGACGGACAGGAAGC   1136
                     ||||||||||||||||||.|.||.||.||.||.||.|||||.||||||||
RBAM_007030__   1093 GGCTCAGTTGATGTCGAAATTAACATTACCTCGTCTGACGGCCAGGAAGC   1142

BSNT_01135___   1137 GGTTATTATCCGCAATGCCGGAGATAAAGAGCCGACTGTTCACATTTATG   1186
                     |.|.||..||||||||||.||.||.|||||.|||||.||.||.|||||.|
RBAM_007030__   1143 GCTGATCGTCCGCAATGCGGGTGACAAAGAACCGACCGTCCATATTTACG   1192

BSNT_01135___   1187 ACTGA   1191
                     |.|.|
RBAM_007030__   1193 ATTAA   1197


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.