Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01149 and RBAM_007100

See Amino acid alignment / Visit BSNT_01149 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:51
# Commandline: needle
#    -asequence dna-align/BSNT_01149___yerO.1.9828.seq
#    -bsequence dna-align/RBAM_007100___yerO.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01149___yerO-RBAM_007100___yerO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01149___yerO-RBAM_007100___yerO.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01149___yerO
# 2: RBAM_007100___yerO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 915
# Identity:     593/915 (64.8%)
# Similarity:   593/915 (64.8%)
# Gaps:         132/915 (14.4%)
# Score: 1809.0
# 
#
#=======================================

BSNT_01149___      1 ATGAATGAAAAAAAAGAGAGAATCATAAAAACCAGCATTCGTTTATTTGC     50
                     |||||.|||||||||||||.||||||||||||..||||.|.|||||||||
RBAM_007100__      1 ATGAACGAAAAAAAAGAGAAAATCATAAAAACAGGCATCCATTTATTTGC     50

BSNT_01149___     51 GAAAAAAGGATTCGCAGCTACGACGATCCAAGAAATCGCCAGTGAATGCG    100
                     .||||||||.||..|..|.||.||.||.||.|||||||||.|||||||||
RBAM_007100__     51 CAAAAAAGGGTTTTCTTCAACAACCATTCAGGAAATCGCCGGTGAATGCG    100

BSNT_01149___    101 GCATTTCGAAGGGCGCTTTTTATTTGCACTTCAAATCGAAAGAAGCGCTG    150
                     |.|||||.||.||.||.||.|||.|.||.||||||||.|||||||..||.
RBAM_007100__    101 GAATTTCAAAAGGGGCCTTCTATCTCCATTTCAAATCAAAAGAAGACCTT    150

BSNT_01149___    151 CTGTTATCTGCCTGTGAATATTATATCGGTATGTCTATGAACAAAATGAA    200
                     .||.|.||.||.|||||.|||||.|||||.|||||||||.|..||||.||
RBAM_007100__    151 TTGCTCTCAGCATGTGAGTATTACATCGGCATGTCTATGGAAGAAATAAA    200

BSNT_01149___    201 AAATATAGAAGAAGATCTTGCCGGA-AAGCCGCCTAAAGAAGTTTTGAAA    249
                     .||.||..||..|||.|.| |.|.| ||.||||||||.||.||.||...|
RBAM_007100__    201 GAAAATCAAAACAGAACAT-CAGCATAAACCGCCTAAGGACGTATTCCGA    249

BSNT_01149___    250 AAACAAATTGGCGC---TCAATTTGAGGATTTTCGCGATCATAAAGATTT    296
                     ||||||||   |||   ||||||..||||.|||...||.||.||.||.||
RBAM_007100__    250 AAACAAAT---CGCATATCAATTCCAGGAATTTATGGAACACAAGGACTT    296

BSNT_01149___    297 TATCGTTCTTTTGCTTACCGAAAATATCATTCCGGAAAATCAAGAAATCA    346
                     ||||.||||.|||||.|.||||||..|||||||.|||||||||.|..|||
RBAM_007100__    297 TATCATTCTCTTGCTGAGCGAAAAGGTCATTCCTGAAAATCAAAAGGTCA    346

BSNT_01149___    347 AGCAATACTTT-------------TACAAAGTAACCATGGAGACGGATAA    383
                     |.||.||.|||             |.|||..||||             |.
RBAM_007100__    347 AACAGTATTTTCATGAGGCCAATATTCAATTTAAC-------------AT    383

BSNT_01149___    384 GCTGTACCGGAACGCCTTGCTGGTATCC---TATGGCGAAGGAATCGAGC    430
                     ||||||.|||.|.||.||||   |.|||   ||.||.||.|...||...|
RBAM_007100__    384 GCTGTATCGGGATGCGTTGC---TCTCCGTTTACGGAGATGCCGTCACAC    430

BSNT_01149___    431 GGTATGTCGCAGATCTGTCCATCATGGCAAGAGGCATTGTGCATTCCTAT    480
                     .||.|.|.||.|||..||||.|.|||||...|||.||||||...||||||
RBAM_007100__    431 CGTTTTTAGCGGATGCGTCCGTTATGGCGCAAGGAATTGTGAGCTCCTAT    480

BSNT_01149___    481 ATGAACGTGATGGTATTTAACGATGAGCTTAATATCG--ATGCAGAA--G    526
                     ||..|..|..||.|.||||   ||||.|.||    ||  ||.|.|.|  |
RBAM_007100__    481 ATTCATTTCTTGATTTTTA---ATGAACATA----CGGCATTCCGGACGG    523

BSNT_01149___    527 AAA---TCTCAGCCTTTATTATTGAGAGACTGGATGATCTTG--TACAGG    571
                     |||   |..|.||||||.|.||||..|||.|.||||||| ||  ||| ||
RBAM_007100__    524 AAAACGTGGCGGCCTTTCTGATTGCCAGAATCGATGATC-TGATTAC-GG    571

BSNT_01149___    572 GGCTGAGCCGTTCTGCACTCAAT-CCGAT----TG-TATCAAAAGACATT    615
                     |.||||...|      |..|||| |||||    || |..|..|.||.||.
RBAM_007100__    572 GACTGATAAG------AGACAATCCCGATCCGCTGCTGCCTGAGGATATC    615

BSNT_01149___    616 T----TCAACCCGATGCCTGCGGAAAAAGACCAG-CTGCTTGAGGACATT    660
                     |    |||.||||    |.|||||.|.||| .|| |||||||.|||.|||
RBAM_007100__    616 TTCACTCAGCCCG----CGGCGGACAGAGA-AAGACTGCTTGCGGATATT    660

BSNT_01149___    661 CAGAAAGTGAAAGAAAACAGCAC-------GCTGCCCGAGGATATCACCG    703
                     ||       |||||.||.|||||       ||||||.|||||..||..||
RBAM_007100__    661 CA-------AAAGATAAAAGCACAGCAGGGGCTGCCTGAGGACGTCCTCG    703

BSNT_01149___    704 TGTCACTTGATGTTATCGAGGAAGAAT-TGACTCAGGATAAACCGCGCAA    752
                     |.||.|||||.||.||.||.||.|||| || |..||||..|.|||||.||
RBAM_007100__    704 TATCGCTTGAAGTCATTGAAGAGGAATGTG-CAAAGGAAGAGCCGCGAAA    752

BSNT_01149___    753 GCCGATTATTAAAGGCATGCTGTCCAATTTGACCGGAACCAACGACAA--    800
                     .||||||||||||||.|||||||||||.|||.|.||   ||.||..||  
RBAM_007100__    753 ACCGATTATTAAAGGAATGCTGTCCAACTTGGCAGG---CAGCGGAAATG    799

BSNT_01149___    801 AGAAG-TTGAAAGGCTTCGGGC-----------CC----TCATCTCTGTC    834
                     ||.|| ||||||.|||.|||||           ||    |||||      
RBAM_007100__    800 AGCAGATTGAAACGCTGCGGGCTTCCATTGAAACCTATTTCATC------    843

BSNT_01149___    835 TTTATCTCAATTTGA    849
                      ||||   ||     
RBAM_007100__    844 -TTAT---AA-----    849


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