Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04127 and RBAM_007150

See Amino acid alignment / Visit BSNT_04127 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:30
# Commandline: needle
#    -asequence dna-align/BSNT_04127.1.9828.seq
#    -bsequence dna-align/RBAM_007150.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04127-RBAM_007150.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04127-RBAM_007150.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04127
# 2: RBAM_007150
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1582
# Identity:     740/1582 (46.8%)
# Similarity:   740/1582 (46.8%)
# Gaps:         617/1582 (39.0%)
# Score: 1237.0
# 
#
#=======================================

BSNT_04127         1 ----------------------------------------------ATGA      4
                                                                   ||||
RBAM_007150        1 ATGAAATCGAATTATAAGAGGATTGGTGATTGCATTCGGTTAGTTGATGA     50

BSNT_04127         5 GTAAGGAA---------------AAGAAGACCATTGAAGAATTAGTAGGA     39
                       ||||||               ||.|  |||.||         .|||||
RBAM_007150       51 --AAGGAATGTTAATCTTAATGTAACA--ACCCTT---------TTAGGA     87

BSNT_04127        40 GAAACTATAGTGCCAGTAGAAGAGCAGCCTT---ATGAACTGCCTGAA--     84
                     ..||.|||        ||.||.||.|..|.|   ||.|..|||   ||  
RBAM_007150       88 CTAAGTAT--------TACAAAAGAATTCATTCCATCAGTTGC---AAAT    126

BSNT_04127        85 --AATTGGA--------TATGGGTAAAATTATTAAATGGTTACGCAGTAT    124
                       |||||||        ||     ||||.|||.|.||          |||
RBAM_007150      127 ACAATTGGAACAGATTTTA-----AAAACTATAAGAT----------TAT    161

BSNT_04127       125 GTCTAGATAAATATCGTAAGCCAGTTAATGC-TGAAGAAAGA-GCAAAAA    172
                        .|||.|||.|        |||||  ||| ||.||.|..| |||    
RBAM_007150      162 ---AAGAAAAAAA--------CAGTT--TGCTTGTAGCACCATGCA----    194

BSNT_04127       173 GAGTAGGG---------AATATACC--TT--ATTATGGTGCTACTGGACA    209
                      ||||.||         ||.||.||  ||  ||||     ||||.|||  
RBAM_007150      195 -AGTAAGGCGAGATAAAAAAATGCCAGTTGCATTA-----CTACAGGA--    236

BSNT_04127       210 AGTTGGATGGATAGATGA--CTATCTTA-CAGATGAGGAACTTGTTCTTT    256
                       ||      || |||||  |||||.|| |.|.||...|.|.||||.|| 
RBAM_007150      237 --TT------AT-GATGAAGCTATCATATCTGCTGCCTATCCTGTTTTT-    276

BSNT_04127       257 TGGGAGAAGATGGAGTTCCT------TTTTTA---GAGCCTTTCAAAAAT    297
                          ||||.||.||.|.||      .|||||   |||..|||    |||
RBAM_007150      277 -----GAAGTTGTAGATACTGAGATGATTTTACCGGAGTATTT----AAT    317

BSNT_04127       298 AAAGCTTATATTATTAGGGAGAAAGCATGGGTTAACAACCATGCACACAT    347
                     .|.|  |...|||.|||     |||  ||.|||        || |||.|.
RBAM_007150      318 GATG--TGGTTTAGTAG-----AAG--TGAGTT--------TG-ACAGAG    349

BSNT_04127       348 ATTAAGGTCTAACTTTGGTTCGGAAGGGAATTTATTCCTACTGCATTATT    397
                     |         |.|||  |||          |||||.|         ||| 
RBAM_007150      350 A---------AGCTT--GTT----------TTTATGC---------TAT-    368

BSNT_04127       398 TGAACCAATTTAATTTTAACGG--GTATGTAAGTGGTACTACTAGATTGA    445
                            |..|..|.|||..||  |||| |.|||||.|     |||||  
RBAM_007150      369 -------AGGTGGTGTTAGAGGTAGTAT-TGAGTGGGA-----AGATT--    403

BSNT_04127       446 AACTTACTCAGAAGAAAATGGCTATCA--TTCCTGTTCCTCTTCCGCCAC    493
                        ||..|      ||.|||     ||  |.||.||||  |||||    .
RBAM_007150      404 ---TTTGT------AATATG-----CAACTCCCGGTTC--CTTCC----A    433

BSNT_04127       494 TCAATGAGCAAAAACGG--ATT--------GC-----------TGAG---    519
                     |..||||||||||  ||  |||        ||           |.||   
RBAM_007150      434 TTGATGAGCAAAA--GGAAATTATAAATAAGCACAAAATATTATTAGATA    481

BSNT_04127       520 -----AAAGTGGAGCGGCTTTTAAGT--AAAATT-GAAGAAGC-------    554
                          ||.|||.|....|||||.|.|  |||||| ||||||.|       
RBAM_007150      482 GAATAAAGGTGAATAATCTTTTCATTCAAAAATTAGAAGAAACCGTACAG    531

BSNT_04127       555 --------AAAGCA---GTTGATTGAAGAAGCGAAGGAAACGTTTGAACT    593
                             .|||||   |||.|||||               .||||||.|
RBAM_007150      532 ACTATCTATAAGCAATGGTTTATTGA---------------CTTTGAATT    566

BSNT_04127       594 TC--------GTCGGGCATCGATTATAAGAACTATT--TTAAAAGAAGAA    633
                     ||        .|.||..||| .|||||| |.|||.|  |..|||.|.|||
RBAM_007150      567 TCCAAATCAATTGGGTAATC-CTTATAA-ATCTAGTGGTGGAAAAATGAA    614

BSNT_04127       634 --TTAAGT--AATGGTAAAC-------TTCCTACAGGTTGGAGAAATATA    672
                       |||| |  |||..|||||       |.||.|..|||||| |||.||.|
RBAM_007150      615 ATTTAA-TCCAATATTAAACACTGAGATACCGAAGGGTTGG-GAAGTAAA    662

BSNT_04127       673 AAGGTT-AAGGATTTGTT-TACCA-TTTTTGGAGGTGGAACTCCAAGTAA    719
                     |...|| |.|||  |||| ||..| |...|||.||.||.||.|||..||.
RBAM_007150      663 ATCATTCACGGA--TGTTGTAAAAGTGGGTGGTGGGGGTACACCAGATAC    710

BSNT_04127       720 GGCAAAAGAAGAGTATTGGAATGGAAGAATACCAT-----------GGA-    757
                     ..|.|..||....|||||||||||..|.||.||||           ||| 
RBAM_007150      711 AACTATTGATACTTATTGGAATGGTGGTATTCCATTTTTTACTCCGGGAG    760

BSNT_04127       758 ---TTTCTGCTAAAGATATGA--------AGAC-----CACTTTTATCTC    791
                        ||||  |.||||.|||.|        ||||     .|..|.||||| 
RBAM_007150      761 ATGTTTC--CGAAAGTTATTATTGCCTTGAGACAGAAAAATCTGTATCT-    807

BSNT_04127       792 AAA--GACAATGGATTACATTACTGAGGAAGGTCTAAACAACTCATCAGC    839
                     |||  |     |||||||         |||              || |||
RBAM_007150      808 AAACTG-----GGATTAC---------GAA--------------AT-AGC    828

BSNT_04127       840 GAAGCTTGCAAAAAGAGGTTCAGTCGCAATGGTTGTAAGGA--GTGGTAT    887
                       ||  |.|||||     ||...||.|||       ||..|  ||    |
RBAM_007150      829 --AG--TACAAAA-----TTATATCCCAA-------AAACACCGT----T    858

BSNT_04127       888 TTTGCAA-----AGAACGCTCCCAGTTG----CAT---TTTTACT----C    921
                     ||||..|     |||..|   .||||||    .||   |||..||    |
RBAM_007150      859 TTTGTTACAGCTAGAGGG---ACAGTTGGGGCTATAGCTTTAGCTGGGAC    905

BSNT_04127       922 TCAGAATGTACAGTTAATCAAGATTTG-AAGGTATTCGATTCTGGAGATG    970
                     |.| |||| |||.|.|||||| |.||| .|.|.||| |||  .||.||| 
RBAM_007150      906 TGA-AATG-ACAATGAATCAA-AGTTGTTATGCATT-GAT--GGGGGAT-    948

BSNT_04127       971 AATTAATAAATAAGTACTTCTTATGGTATGTAAAAGGCAATGAAAGGAAC   1020
                             |||.||||    |||   |||..|    .||||     .|||
RBAM_007150      949 --------AATCAGTA----TTA---TATCCA----CCAAT-----TAAC    974

BSNT_04127      1021 --TTGTTAC----ATAACTATTCAAAATC-------TGGAACTACTGTTA   1057
                       |||.|||    |.||.|.|..||||.|       ||||.|...|.|||
RBAM_007150      975 TATTGCTACAATTAGAAGTTTAAAAAAACAAGCAAGTGGAGCGGTTTTTA   1024

BSNT_04127      1058 ATAGTATTGAATTTG-AAAAG--TTTAAGTCTCATGAAATCTTATTACCG   1104
                     || |.|||||  |.| |||||  |||..|...||  ||||    .||..|
RBAM_007150     1025 AT-GCATTGA--TAGTAAAAGATTTTGCGGAGCA--AAAT----GTAGTG   1065

BSNT_04127      1105 CCTATGGACGTACTAAAGCA----GAAAATAGATAAAATTGAAAATGTAA   1150
                     |  ||..||   |||||| |    ||||||||.|    ||.|||||.||.
RBAM_007150     1066 C--ATCCAC---CTAAAG-ATATCGAAAATAGTT----TTCAAAATATAG   1105

BSNT_04127      1151 TTGAAAAGG-----AAAAAAGTGCAAACGTTATGCTAAACTTAGCAAACT   1195
                     |    ||||     |.|.|| .||||  .||||..||||.||   .||||
RBAM_007150     1106 T----AAGGGGTTTATATAA-CGCAA--TTTATCTTAAAGTT---GAACT   1145

BSNT_04127      1196 CAATCGATGAATTGA--AATCTTCTATCCTTTCCAAA---GCTTTTCGAG   1240
                     .|||     ||.|.|  ||.| ||.|  ||.|  |||   ||||||  |.
RBAM_007150     1146 AAAT-----AAGTTATTAAGC-TCAA--CTGT--AAAGCTGCTTTT--AT   1183

BSNT_04127      1241 GTGAACTCGGAACGAACGACCCAAGTGAAGAAAATGCGGTTG-AATTGT-   1288
                     .|.||||.|..||| ||||   ..|.||||||.|     ||| ||||.| 
RBAM_007150     1184 CTAAACTTGCCACG-ACGA---GGGGGAAGAACA-----TTGAAATTCTC   1224

BSNT_04127      1289 TAAAAGAAGTGCTACAAGAACAAGTGAAATAG   1320
                     |.|                             
RBAM_007150     1225 TGA-----------------------------   1227


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