Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_01231 and RBAM_007350

See Amino acid alignment / Visit BSNT_01231 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:53
# Commandline: needle
#    -asequence dna-align/BSNT_01231___yetJ.1.9828.seq
#    -bsequence dna-align/RBAM_007350___yetJ.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01231___yetJ-RBAM_007350___yetJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01231___yetJ-RBAM_007350___yetJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01231___yetJ
# 2: RBAM_007350___yetJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 650
# Identity:     487/650 (74.9%)
# Similarity:   487/650 (74.9%)
# Gaps:          10/650 ( 1.5%)
# Score: 1761.0
# 
#
#=======================================

BSNT_01231___      1 ATGCAAGCTACGGTTCACGAGAGTAAGCAATCGATCATGCAACGCATTTT     50
                     ||||||.||.|.|.|.|.|||||.||.|||||.||.|||||.||||||.|
RBAM_007350__      1 ATGCAAACTGCTGCTTATGAGAGCAAACAATCTATTATGCAGCGCATTAT     50

BSNT_01231___     51 GACAGTCTTTGTCTTCACTTTGCTGATCGCGACTGTCGGCCTTTTTATCG    100
                     .||.||.|||||.||.||..||.|..|.|||||..|||||||.|.||..|
RBAM_007350__     51 AACGGTATTTGTGTTTACACTGTTAGTTGCGACAATCGGCCTGTATACGG    100

BSNT_01231___    101 GCCAATTTGTTCCTGTC-GCTTTGATGCTGCCGCTTTCTATTCTT-GAAG    148
                     |.||.||..|||| |.| ||.||||||||||||||.||.| |||| ||.|
RBAM_007350__    101 GTCAGTTCATTCC-GCCGGCATTGATGCTGCCGCTGTCGA-TCTTAGAGG    148

BSNT_01231___    149 TGGTGATGATTATTCTGGCCTTCTGGATGCGCAGAAGAAAAGCGGTCGGG    198
                     |.||.|||||.||....||.||.|||.|||||.|||.||||||.|||||.
RBAM_007350__    149 TCGTCATGATCATCGCCGCATTTTGGCTGCGCCGAAAAAAAGCCGTCGGA    198

BSNT_01231___    199 TATGCGTTTGTATATACATTCGCGTTCGTTTCCGGCATTACCTTATTTCC    248
                     ||||.||||||.|.|.|||||||.|||.|||||||.||.||..|.|||||
RBAM_007350__    199 TATGTGTTTGTCTTTTCATTCGCTTTCATTTCCGGAATGACGCTGTTTCC    248

BSNT_01231___    249 GATCGTCAGCCATTACGCTTCCATCGCCGGCGCCTATGTCGTGCTTGAAG    298
                     |||..||||||||||.||.|||...||.||.|||||||||||..|.||.|
RBAM_007350__    249 GATTATCAGCCATTATGCGTCCGCAGCGGGGGCCTATGTCGTATTGGAGG    298

BSNT_01231___    299 CCTTTGGTTCTACATTTGTCATTTTTGCCGTCTTAGGCACAATCGGCGCA    348
                     |.||.|||||..|.|||||.||||||||.||..|.|||||.||||||||.
RBAM_007350__    299 CATTCGGTTCATCGTTTGTGATTTTTGCGGTGCTCGGCACGATCGGCGCT    348

BSNT_01231___    349 AAAATGAAGAAGGATTTATCCTTCCTGTGGTCATTTCTGCTGGTTGCGGT    398
                     ||.|.|||.|||||.||.||.||..|.|||||.||..||||.||.||.||
RBAM_007350__    349 AAGACGAAAAAGGACTTGTCGTTTTTATGGTCCTTCTTGCTTGTCGCTGT    398

BSNT_01231___    399 GCTCGC---CCTCGCAGTGGTAGGGATTTTCAACATTTTCAGCCCGTTAA    445
                     ..||||   .|||||||||   |||||.||.||.||||||||||||.|.|
RBAM_007350__    399 CATCGCGCTTCTCGCAGTG---GGGATCTTTAATATTTTCAGCCCGCTGA    445

BSNT_01231___    446 ACTCAGCGGCGATGATGGCGTATTCCGTGATCGGAACCATCGTCTTTTCC    495
                     |.||.||.||.|||||||||||||||||.|||||.||.||.||.|||||.
RBAM_007350__    446 ATTCCGCCGCCATGATGGCGTATTCCGTCATCGGGACGATTGTGTTTTCA    495

BSNT_01231___    496 CTTTACATTTTGTATGATTTGAACCAAATCAAGCACCGCCACATTACGGA    545
                     .|.|||||.||.||.|||.|||||||.|||||||||||..||||.||||.
RBAM_007350__    496 ATGTACATCTTATACGATCTGAACCAGATCAAGCACCGGGACATCACGGC    545

BSNT_01231___    546 AGACTTGATTCCGGTTATGGCGTTATCGCTGTACCTAGACTTTATCAACT    595
                     .|||.|||||||..|.|||||.||..||||.||..|.||||||||.|||.
RBAM_007350__    546 TGACCTGATTCCTTTGATGGCATTGACGCTTTATATCGACTTTATTAACC    595

BSNT_01231___    596 TGTTCATCAACCTGCTCCGCTTCTTCGGCATTTTGAGCAGTGATGATTAA    645
                     ||||.|||||||||||.||.||.|||||.|||||.|.|||||||||||||
RBAM_007350__    596 TGTTTATCAACCTGCTACGGTTTTTCGGAATTTTAAACAGTGATGATTAA    645


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.