Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01245 and RBAM_007540
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:55
# Commandline: needle
# -asequence dna-align/BSNT_01245___yfnF.1.9828.seq
# -bsequence dna-align/RBAM_007540___yfnF.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01245___yfnF-RBAM_007540___yfnF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01245___yfnF-RBAM_007540___yfnF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01245___yfnF
# 2: RBAM_007540___yfnF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 949
# Identity: 690/949 (72.7%)
# Similarity: 690/949 (72.7%)
# Gaps: 74/949 ( 7.8%)
# Score: 2445.0
#
#
#=======================================
BSNT_01245___ 1 GTGACCAGCGCGTATTGCACCGTTTTATCAAAAGGAAGATTATATCAGGC 50
|||||.|||||.||||||||.|||||||||||||||||..|.||||||||
RBAM_007540__ 1 GTGACAAGCGCATATTGCACAGTTTTATCAAAAGGAAGGCTGTATCAGGC 50
BSNT_01245___ 51 AGTCGCTTTGTTTAAGTCGTTAGAGCTAGTTGA-------TCA---AGAC 90
..||||||||| ||| |||..|||| ||| .|||
RBAM_007540__ 51 TATCGCTTTGT-----TCG-----GCTCATTGAAAGCGGTTCAGGCGGAC 90
BSNT_01245___ 91 AGTCCCATTTTTATACTT--TGCATGGATGAAGATACGCACC----GCGT 134
...|||||||| ||||| ||.|||||..|||| |||| .|||
RBAM_007540__ 91 GCCCCCATTTT--TACTTTGTGTATGGACCAAGA----CACCTATGACGT 134
BSNT_01245___ 135 GTTACAGAAGCTGAAGATGAAGCAGCTGA-------ACCTTG-TGCCGGT 176
|.|.||| || .|||..|||| || |||||| |.|.|.|
RBAM_007540__ 135 GCTTCAG--GC----AATGCGGCAG--GATAATGTCACCTTGATTCAGAT 176
BSNT_01245___ 177 GGCCGCTCTTGAAAATGAATTGCTTC-TGAAGCTGAAGGAAACTAGAGAT 225
|.||||.||.||||||||...|||.| |||| ||||||...||.||.|||
RBAM_007540__ 177 GTCCGCACTGGAAAATGAGGAGCTCCTTGAA-CTGAAGCGGACGAGGGAT 225
BSNT_01245___ 226 CAAAGTGAGTATTGCTGGACGATGAAGCCGATCTTTCTGCAAGCTGTGCT 275
||.||.||.||.|||||||||.||||||||.|.|||||..||...|||||
RBAM_007540__ 226 CAGAGCGAATACTGCTGGACGGTGAAGCCGGTATTTCTCGAATTCGTGCT 275
BSNT_01245___ 276 GAATAGCAATCCCGGGCTGGAGCGTGTGACGTATATTGACGGGGATCTCT 325
|.|..|..||||.|...|.||||||||.|||||.|||||.|..|||.|.|
RBAM_007540__ 276 GGACGGACATCCGGAATTAGAGCGTGTCACGTACATTGATGCCGATTTGT 325
BSNT_01245___ 326 TTTTCTATGCAGATCCATCGC-CGATTTTTGAAAACCAGCCGGACTGCTC 374
||||||..||.||||| .||| ||||||||||.||.||||||||.||.||
RBAM_007540__ 326 TTTTCTTCGCTGATCC-GCGCGCGATTTTTGACAATCAGCCGGATTGTTC 374
BSNT_01245___ 375 GGTGTTGCTTTCACGAGGGGATATTGTAATCCCTTCTTTTGAGAAAGAGC 424
||||.|.||.|||||.||.|||||.||.||.||.||.|||||.|||.||.
RBAM_007540__ 375 GGTGCTTCTGTCACGGGGCGATATCGTCATTCCCTCATTTGAAAAACAGG 424
BSNT_01245___ 425 AGATTGACATGCTGCAGCGTCTTTTAGGCAGATATAATTCCGGGTTTATC 474
|.||.||||||||||||||||||||||||.|.|||||||||||.|||.||
RBAM_007540__ 425 AAATCGACATGCTGCAGCGTCTTTTAGGCCGGTATAATTCCGGTTTTCTC 474
BSNT_01245___ 475 AGCTTCAAGCATGATGATGCAGGCACGGATTG-CTTGGAGTGGTGGAAGG 523
||||||||....||...|||.|||||.||||| ||..|| ||||||||.|
RBAM_007540__ 475 AGCTTCAAAACCGACAGTGCCGGCACAGATTGTCTCAGA-TGGTGGAAAG 523
BSNT_01245___ 524 AACGCTGTCTTGAGGAATGCAAAAATGCACCGGGTGAAGGGAAATTCGGT 573
|||||||.||.||.||||||||||||||.|||||.|||||.||||||||.
RBAM_007540__ 524 AACGCTGCCTGGAAGAATGCAAAAATGCGCCGGGCGAAGGAAAATTCGGA 573
BSNT_01245___ 574 GATCAGGGCTATTTGGATTATATGTCTGAGCTGTTTCCGAATGTGTGTGA 623
|||||.|||||.||||||||.|||||.|..|||||.||||||||||||||
RBAM_007540__ 574 GATCAAGGCTACTTGGATTACATGTCCGGCCTGTTCCCGAATGTGTGTGA 623
BSNT_01245___ 624 CATTACAACACCCGGCGTGAACATCGGCCATTGGAATTATGGACAGCATA 673
|||.||.||.|||||||||||.|||||||||||||||||.||.|..||.|
RBAM_007540__ 624 CATCACCACGCCCGGCGTGAATATCGGCCATTGGAATTACGGCCGCCACA 673
BSNT_01245___ 674 CGTTTTCCTGGAAAGATGGCCGGATCGTGCTGGAGGATGGCAGTCCGCTG 723
|||||||.|||||.||.||.||..|.|||||.||.||.||.|||||||||
RBAM_007540__ 674 CGTTTTCATGGAAGGACGGGCGTCTTGTGCTCGAAGACGGAAGTCCGCTG 723
BSNT_01245___ 724 ATCTTTTATCATTTCAGCGGATACCGAATCGT--CAGCATCAATGAAATC 771
||.||.||||||||||||||||||||.||||| |||| |...||.||.
RBAM_007540__ 724 ATTTTCTATCATTTCAGCGGATACCGGATCGTTACAGC--CGGCGACATT 771
BSNT_01245___ 772 AAACAGATTCATGAAACAACCCGCACAGATCTGCCGTTTGTGCATGAACT 821
...|||||||||||.||...|||.||.||.|||||||||||.|||.|.||
RBAM_007540__ 772 CGGCAGATTCATGAGACGGACCGGACCGACCTGCCGTTTGTCCATCAGCT 821
BSNT_01245___ 822 GTATCAAGAGACACTGCCGCATATCAT--------TCAGCACATGCAAAC 863
.|||||.||.|..|||..||...|.|| |||||.| |
RBAM_007540__ 822 TTATCAGGACATTCTGAAGCGGGTGATCGGGACGGTCAGCGC-------C 864
BSNT_01245___ 864 GTTAGACCCTGAATTTAACGGTTTTGCTTCAAAAGATGACAACAAATAA 912
||..| |||.||.||.|.|||.|||||.||..|.|||||.|||||||||
RBAM_007540__ 865 GTCTG-CCCGGAGTTCAGCGGCTTTGCATCTGAGGATGATAACAAATAA 912
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