Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01252 and RBAM_007590
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:55
# Commandline: needle
# -asequence dna-align/BSNT_01252___yfmT.1.9828.seq
# -bsequence dna-align/RBAM_007590___yfmT.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01252___yfmT-RBAM_007590___yfmT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01252___yfmT-RBAM_007590___yfmT.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01252___yfmT
# 2: RBAM_007590___yfmT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1473
# Identity: 1153/1473 (78.3%)
# Similarity: 1153/1473 (78.3%)
# Gaps: 30/1473 ( 2.0%)
# Score: 4466.5
#
#
#=======================================
BSNT_01252___ 1 ATGTTTCAATATGAAGAGTTGAATAAACAGTTTATCGGCGGGAAATGGCA 50
|||||||||||||||||..|.|||||.||||||||||||||...||||..
RBAM_007590__ 1 ATGTTTCAATATGAAGAACTAAATAAGCAGTTTATCGGCGGCCGATGGAG 50
BSNT_01252___ 51 GGAGGGCAGCAGCCCAAATGTATTGGAAAACAAAAATCCTTATACTCAAA 100
|||.||.|||||||..||.|||||||||||||.|||||||||||||||||
RBAM_007590__ 51 GGATGGGAGCAGCCGGAACGTATTGGAAAACAGAAATCCTTATACTCAAA 100
BSNT_01252___ 101 AA-ACATTCACAACATTCCGTAAAGCGACTGCTGACGATGTAGATGAAGC 149
|| .|| ||||..||||||..||||||||..||||.||.||.||||..||
RBAM_007590__ 101 AAGTCA-TCACCTCATTCCAAAAAGCGACGTCTGATGACGTGGATGCGGC 149
BSNT_01252___ 150 GTATCGGGCAGCGGCGCTGGCAAAGAAAAAATGGGATGCGGTCAACCCGT 199
.||||||||.|||||.||.||.||..||.|||||||....||.|||||.|
RBAM_007590__ 150 ATATCGGGCCGCGGCTCTTGCGAAACAAGAATGGGACAAAGTAAACCCTT 199
BSNT_01252___ 200 TTGAGAAAAGAACAATTTTAGAAAAAGCCGTCACGTATATTGAAGAAAAT 249
||.|.||..|..|.|||||.|||||||||||..|.|..||||||||..|.
RBAM_007590__ 200 TTAAAAAGCGGGCCATTTTGGAAAAAGCCGTTTCTTTCATTGAAGAGCAC 249
BSNT_01252___ 250 GAAGAAGCCATTATTTATTTAATTATGGAGGAGCTAGGCGGTACAAGGCT 299
||||||||.||||||||.|||||.|||||||||||.|||||.|||.||||
RBAM_007590__ 250 GAAGAAGCGATTATTTACTTAATCATGGAGGAGCTTGGCGGAACACGGCT 299
BSNT_01252___ 300 CAAAGCGGCTTTTGAAATCGGACTTGTCAAAAACATCATGAAAGAAGCGG 349
.||.||.|..|||||||||||||||||||||||.||.||.||||||||.|
RBAM_007590__ 300 GAAGGCTGAGTTTGAAATCGGACTTGTCAAAAATATGATAAAAGAAGCCG 349
BSNT_01252___ 350 CAACGTTCCCAATCCGCATGGAGGGGAAAATTCTTCCGTCCACAATAGAT 399
||||.||.||..|.||.|||||.|||||||||||.||||||||.||.||.
RBAM_007590__ 350 CAACATTTCCGGTGCGGATGGAAGGGAAAATTCTCCCGTCCACGATTGAC 399
BSNT_01252___ 400 GGCAAGGAAAACAGATTATATCGTGTGCCAGCAGGCGTTGTCGGTGTCAT 449
||.||.||||||||..|.||..|..|.||.||.||.||.||.||.||.||
RBAM_007590__ 400 GGAAAAGAAAACAGGCTGTACAGAATACCCGCCGGAGTCGTGGGGGTGAT 449
BSNT_01252___ 450 CAGTCCGTTTAACTTCCCATTCTTTTTATCTATGAAATCAGTGGCGCCTG 499
|||.||||||||.|||||.||.||..|.||.||||||||.||.|||||.|
RBAM_007590__ 450 CAGCCCGTTTAATTTCCCGTTTTTCCTTTCGATGAAATCTGTTGCGCCGG 499
BSNT_01252___ 500 CACTCGGAGCCGGCAATGGCGTTGTGCTAAAGCCGCATGAGGAAACGCCG 549
||||.||.||.||.||.|||||.|||||.|||||.|||||.|||||.|||
RBAM_007590__ 500 CACTGGGCGCGGGGAACGGCGTCGTGCTGAAGCCTCATGAAGAAACACCG 549
BSNT_01252___ 550 ATTTGCGGCGGAACGCTGATCGCGAAAATTTTTGAGAACGCGGGAATTCC 599
||.||||||||||||||.|||||||||||||||| |.|||| ||
RBAM_007590__ 550 ATCTGCGGCGGAACGCTTATCGCGAAAATTTTTG---AAGCGG-----CC 591
BSNT_01252___ 600 AGCG--------GGGCTGCTGAATGTTGTTGTCACAGACATTGCAGAAAT 641
.||| |||||||||||||||.|.||.||.||.||.|..||.||
RBAM_007590__ 592 GGCGTACCGGACGGGCTGCTGAATGTTATCGTGACGGATATCGGGGAGAT 641
BSNT_01252___ 642 CGGCGACAGCTTTGTTGAGCATCCAGTGCCGCGGATCATCTCATTTACCG 691
||||||||||||||||||||||||.||.||||||||.|||||||||||.|
RBAM_007590__ 642 CGGCGACAGCTTTGTTGAGCATCCCGTCCCGCGGATAATCTCATTTACAG 691
BSNT_01252___ 692 GTTCTACGAAAGTCGGCAGCTACATTGGACAGCTTGCGATGAAGCATTTT 741
|.||.||...|||.||||||||.||.||||||||||||.|.||.||.|||
RBAM_007590__ 692 GCTCAACCGGAGTGGGCAGCTATATCGGACAGCTTGCGGTCAAACACTTT 741
BSNT_01252___ 742 AAAAAGCCGCTTCTTGAGCTTGGCGGAAACAGCGCCTTCATCGTACTGGA 791
|||||.|||||..|.||||||||||||||||||||..|.|||||.||.||
RBAM_007590__ 742 AAAAAACCGCTGTTGGAGCTTGGCGGAAACAGCGCGCTGATCGTGCTTGA 791
BSNT_01252___ 792 GGATGCAGATATAGAATATGCGGTCAATGCGGCGGTGTTCAGCCGATTTA 841
||||||.|||.|.|||||.||.|||||||||||.||.||||||||.||||
RBAM_007590__ 792 GGATGCTGATCTTGAATACGCCGTCAATGCGGCTGTATTCAGCCGGTTTA 841
BSNT_01252___ 842 CACATCAAGGACAGATTTGCATGTCAGCCAACCGCGTGCTTGTTCATTCT 891
|.||||||||.|||||.||||||||.||.|||||||||||.|||||..|.
RBAM_007590__ 842 CGCATCAAGGCCAGATCTGCATGTCGGCGAACCGCGTGCTCGTTCACACA 891
BSNT_01252___ 892 TCTATTTATGACAAGTTCCTTGAGCTGTACCAGGCAAAAGTGGAATCGCT 941
|||.|.||||||||.||....|||||.|||.|.||.||||||..||||||
RBAM_007590__ 892 TCTGTATATGACAAATTTACAGAGCTTTACGAAGCGAAAGTGTCATCGCT 941
BSNT_01252___ 942 GAAAGTCGGCGACCCAATGGATCCTGATACGATTATCGGGCCATTAATCA 991
||||||||||||.||.|||||.|||||||||.|||||||.||.|||||||
RBAM_007590__ 942 GAAAGTCGGCGATCCGATGGACCCTGATACGGTTATCGGTCCTTTAATCA 991
BSNT_01252___ 992 A-CAGCAGACAGACGGACGGGCTGATGA-AGACTGTTGAGCAAGCAATTG 1039
| .|| ||||||.||||.||.|||| || .|.||||.||..||||.||.|
RBAM_007590__ 992 ATGAG-AGACAGGCGGAAGGTCTGA-GACGGTCTGTCGAAAAAGCGATAG 1039
BSNT_01252___ 1040 AAGAAGGCGCTGTACCAGTGAAGCTTGGCGGATTTAACGGGACGATCGTG 1089
||||.||.||.||.||.|||..|...|||.||||.|.|||.|||.|||..
RBAM_007590__ 1040 AAGAGGGAGCGGTTCCGGTGCTGTCCGGCCGATTCAGCGGAACGGTCGCT 1089
BSNT_01252___ 1090 GAACCGACG--ATCTTAAAAGACGTCAAACCGTTCATGAGCATTGCCAAG 1137
||.|| || ||.||||||||.||.|||||....|||||||||||.|||
RBAM_007590__ 1090 GAGCC--CGTCATTTTAAAAGATGTGAAACCTGAGATGAGCATTGCGAAG 1137
BSNT_01252___ 1138 GAAGAGCTGTTCGGACCAGTCGTCTCCTTTATGAAGTTTGATTCAGAAGA 1187
||.||||||||||||||.|.|||||.|.|.||||.||||||..|.||.||
RBAM_007590__ 1138 GAGGAGCTGTTCGGACCGGCCGTCTGCATCATGACGTTTGAAACGGAGGA 1187
BSNT_01252___ 1188 CGAAGCGGTGGATATCGCAAACGAAACCCCGTTTGGCTTGAGCGGTGCTG 1237
.||||||||....||||||||||..||.|||||.||.||.|||||.||.|
RBAM_007590__ 1188 TGAAGCGGTAAGCATCGCAAACGCGACACCGTTCGGTTTAAGCGGAGCCG 1237
BSNT_01252___ 1238 TACATACGTCAAATCTTGAGCGCGGCGTGGCATTTGCGAAACGCATTGAA 1287
|.||||||.||||..|||||||||||||.|..|||||.||.||.||.|||
RBAM_007590__ 1238 TGCATACGGCAAACGTTGAGCGCGGCGTTGAGTTTGCTAAGCGGATCGAA 1287
BSNT_01252___ 1288 ACAGGCATGATTCACGTCAATGACACGACCATCAATGATGAACCGAATGT 1337
||.|||||||||||||||||.||.||||||||.||||||||||||||.||
RBAM_007590__ 1288 ACCGGCATGATTCACGTCAACGATACGACCATTAATGATGAACCGAACGT 1337
BSNT_01252___ 1338 AGCCTTCGGCGGTGAAAAGCAATCAGGCCTCGGCCGTTTAAATGGTGAGT 1387
.||.||||||||.||.|||||||||||.||||||.|..|.||.|||||.|
RBAM_007590__ 1338 CGCGTTCGGCGGCGAGAAGCAATCAGGTCTCGGCAGGCTGAACGGTGAAT 1387
BSNT_01252___ 1388 GGAGCCTCGAAGAATTTACAACGCTGAAATGGATCTCGGTCCAGCACGAA 1437
|||||||.||||||||.||.||||||||||||||.|||||.|||||.|||
RBAM_007590__ 1388 GGAGCCTTGAAGAATTCACCACGCTGAAATGGATTTCGGTTCAGCATGAA 1437
BSNT_01252___ 1438 AAACGCAGC--TTCCCTTATTAA 1458
||||| || |||||.||||||
RBAM_007590__ 1438 AAACG--GCAATTCCCATATTAA 1458
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