Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01271 and RBAM_007720
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:57
# Commandline: needle
# -asequence dna-align/BSNT_01271___pel.1.9828.seq
# -bsequence dna-align/RBAM_007720___pel.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01271___pel-RBAM_007720___pel.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01271___pel-RBAM_007720___pel.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01271___pel
# 2: RBAM_007720___pel
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1303
# Identity: 938/1303 (72.0%)
# Similarity: 938/1303 (72.0%)
# Gaps: 77/1303 ( 5.9%)
# Score: 3167.0
#
#
#=======================================
BSNT_01271___ 1 ATGAAAAAAGTGATGTTA-----GCT-GCGGCTTTGTTTTTAGGATTGAC 44
||||||||| |||||| ||| |||| |||| ||||.|..|||.
RBAM_007720__ 1 ATGAAAAAA---ATGTTATTTATGCTGGCGG-TTTG--TTTATGTATGAT 44
BSNT_01271___ 45 TCCAGCTGGCGCGAACGCAGCTGATTTAGGCCACCAGACGTTGGGATCCA 94
.||.||.|.||...|.||.||||||.|.||.|..||||||||.|||.|.|
RBAM_007720__ 45 CCCTGCGGACGTCTATGCCGCTGATCTGGGACGGCAGACGTTAGGAACAA 94
BSNT_01271___ 95 ATGATGGCTGGGGCGCGTACTCGACCGGC---ACGACAGGCGGATCAAAA 141
||||.||||||||.|| |.|..||||| ||.||.|||||..|.|||
RBAM_007720__ 95 ATGACGGCTGGGGAGC---CGCTTCCGGCGGGACAACCGGCGGCGCGAAA 141
BSNT_01271___ 142 GCATCCTCCTCAAATGTGTATACCG--TCAGCAACAGAAACCAGCTTGTC 189
||.||.||.||.|||||.||.|||| ||| ||||||.|.|||||.||.
RBAM_007720__ 142 GCCTCTTCATCGAATGTATACACCGTATCA--AACAGACAGCAGCTCGTT 189
BSNT_01271___ 190 TCGGCATTAGGGAAGGAAACG--AACACAACGCCAAAAATCATTTATAT- 236
||.||||||||| ||||.|| ||||..|||||.||.||.|||||.||
RBAM_007720__ 190 TCCGCATTAGGG--GGAAGCGCCAACAGCACGCCGAAGATTATTTACATA 237
BSNT_01271___ 237 CAAGGGAACGATTGACATGAACGTGGATGA---CAATCTGAAGCCGCTTG 283
||| ||.||.||..|.|||||...|||.|| |||| ||..|.||.|
RBAM_007720__ 238 CAA-GGCACAATCAATATGAATACGGACGACCGCAAT---AAAACACTCG 283
BSNT_01271___ 284 GCCTAAATGATTATAAAGATCCGGAGTATGATTTGGACAAATATTTGAAA 333
||.|.|||||||||||||||||||..||||||..|.||...|||.||||.
RBAM_007720__ 284 GCTTTAATGATTATAAAGATCCGGCATATGATCCGAACGCCTATCTGAAG 333
BSNT_01271___ 334 GCCTATGATCCTAGCACATGGGGCAAAAAAGAGCCGTCGGGAACACAAGA 383
||.||.||.||...||.||||||.|||||||.||||||.||.||.||.||
RBAM_007720__ 334 GCGTACGACCCGGACAAATGGGGAAAAAAAGCGCCGTCAGGCACCCAGGA 383
BSNT_01271___ 384 AGAAGCGAGAGCA-CGCTCTCAGAAAAACCAAAAAGCACGGGTCATGGTG 432
|||.||.||| || ||.||.||.||||||||.||.|||||||||.||.|.
RBAM_007720__ 384 AGACGCCAGA-CAGCGATCGCAAAAAAACCAGAAGGCACGGGTCGTGATT 432
BSNT_01271___ 433 GATATCCCTGCAAACACGACGATCGTCGGTTCAGGGACTAACGCTAAAGT 482
||.||||||.||||.|||||||||.||||.||.||..|.||.||.|||||
RBAM_007720__ 433 GACATCCCTTCAAATACGACGATCATCGGCTCGGGTTCAAATGCCAAAGT 482
BSNT_01271___ 483 CGTGGGAGGAAACTTCCAAATCAAGA-----GT-GATAACGTCATTATTC 526
....||.||||..||..|.||.|||| || ||.||.|||||.||.|
RBAM_007720__ 483 GACAGGCGGAAGTTTTAATATAAAGAACGGCGTCGACAATGTCATCATCC 532
BSNT_01271___ 527 GCAACATTGAATTCCAGGATGCCTATGACTATTTTCCGCAATGGGATCCG 576
|||||||||||||.||.||.||.||.||||||||||||||||||||.|||
RBAM_007720__ 533 GCAACATTGAATTTCAAGACGCTTACGACTATTTTCCGCAATGGGACCCG 582
BSNT_01271___ 577 ACTGACGGAAGCTCAGGGAACTGGAACTCACAATACGACAACATCACGAT 626
||.|||||.|||...||.|||||||||||..||||.|||||.|||||.||
RBAM_007720__ 583 ACGGACGGCAGCAGCGGCAACTGGAACTCTGAATATGACAATATCACCAT 632
BSNT_01271___ 627 AAACGGCGGCACACACATCTGGATTGATCACTGTACATTTAATGACGGTT 676
.|||||||..||.|||||||||||.|||||.||.||.|||||||||||.|
RBAM_007720__ 633 TAACGGCGCGACGCACATCTGGATCGATCATTGCACCTTTAATGACGGAT 682
BSNT_01271___ 677 CGCGTCCGGACAGCACATCACCGAAATATTATGGAAGAAAATATCAGCAC 726
||..|||.||||||...|..||..|.|||||.||.|||||||||||||||
RBAM_007720__ 683 CGAATCCCGACAGCGGTTTTCCCTACTATTACGGGAGAAAATATCAGCAC 732
BSNT_01271___ 727 CATGACGGCCAAACGGATGCTTCCAACGGTGCTAACTATATCACGATGTC 776
|||||||||||.||||||....|||||||.||.||.|||||.||..||||
RBAM_007720__ 733 CATGACGGCCAGACGGATATAGCCAACGGGGCGAATTATATTACATTGTC 782
BSNT_01271___ 777 CTACAACTATTATCACGATCATGATAAAAGCTCCATTTTCGGATCAAGTG 826
|||.||..|.|||||.||.|||||.|||.|||||.|..|||||...||.|
RBAM_007720__ 783 CTATAATAAATATCATGACCATGACAAAGGCTCCGTCATCGGAAACAGCG 832
BSNT_01271___ 827 ACAGCAAAACCTCCGATGACGGCAAATTAAAAATTACGCTGCATCATAAC 876
|||||||.||.||.|||||.||.|||.|.||..|.||.||.||.||||||
RBAM_007720__ 833 ACAGCAAGACGTCGGATGAAGGAAAACTGAAGGTGACCCTTCACCATAAC 882
BSNT_01271___ 877 CGCTATAAAAATATTGTCCAGCGCGCGCCGAGAGTCCGCTTCGGGCAAGT 926
...||..|.||.||.|||||||||||.|||.|.|||||.|.||||||.||
RBAM_007720__ 883 TATTACCAGAACATCGTCCAGCGCGCACCGCGGGTCCGGTACGGGCAGGT 932
BSNT_01271___ 927 GCACGTATACAACAACTATTATGAAGG----AAGCACAAGCTCTTCAAGT 972
.||..|.||.||.||.|.|||.|.||| || ||||.|..||
RBAM_007720__ 933 TCATATTTATAATAATTTTTACGCAGGCTCTAA----AAGCGCCGCA--- 975
BSNT_01271___ 973 TATCCTTTCAGCTATGCATGGGGAATCGGAAAGTCA----TCTAAAATCT 1018
||.||.|||||||||||.||||| ..||| |.|| ||.|||||.|
RBAM_007720__ 976 TACCCGTTCAGCTATGCGTGGGG-CGCGG---GCCACGCGTCGAAAATAT 1021
BSNT_01271___ 1019 ATGCCCAAAACAATGTCATTGACGTACCGGGACTGTCAGCTGCTAAAACG 1068
|||||||.||.|||||..||||.||.|||||||||.|.||||.||||...
RBAM_007720__ 1022 ATGCCCAGAATAATGTTTTTGAAGTGCCGGGACTGGCTGCTGATAAAGTC 1071
BSNT_01271___ 1069 ATCAGCGTATTCAGCGGGGGAA---CGGCTTTAT-ATGACTCCGGCACGT 1114
||||||||.||||||||.|||| | ||||.|| |.|| ||||||..
RBAM_007720__ 1072 ATCAGCGTCTTCAGCGGCGGAAAAGC-GCTTCATGAAGA---CGGCACTC 1117
BSNT_01271___ 1115 TGCTGAACGGCACACAGATCAACGCATCGGCTGCAAACGGGCTGAGCTC- 1163
|..|.||||||.|....||.|||||.|||||.||.|||||..|.|| ||
RBAM_007720__ 1118 TTTTAAACGGCGCCGCCATTAACGCGTCGGCCGCCAACGGATTAAG-TCA 1166
BSNT_01271___ 1164 TTCTGTCGGCTGGACGCCGTCTCTGCATGGATCGATTGATGCT--TCTGC 1211
.||.|||||||||||.|||||..||||.||.||.||.| ||| ||..|
RBAM_007720__ 1167 GTCCGTCGGCTGGACACCGTCATTGCACGGTTCCATCG--GCTCATCATC 1214
BSNT_01271___ 1212 TAATGTGAAATCAAATGTTATAAATCAAG-CGGGTGCGGGTAAATTAAAA 1260
.|||||.||||||.||||||||..|.||| ||||| ||||.|.|||||||
RBAM_007720__ 1215 AAATGTAAAATCAGATGTTATATCTAAAGCCGGGT-CGGGCATATTAAAA 1263
BSNT_01271___ 1261 TAA 1263
|||
RBAM_007720__ 1264 TAA 1266
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