Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01278 and RBAM_007810
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:57
# Commandline: needle
# -asequence dna-align/BSNT_01278___citM.1.9828.seq
# -bsequence dna-align/RBAM_007810___citM.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01278___citM-RBAM_007810___citM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01278___citM-RBAM_007810___citM.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01278___citM
# 2: RBAM_007810___citM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1310
# Identity: 1043/1310 (79.6%)
# Similarity: 1043/1310 (79.6%)
# Gaps: 19/1310 ( 1.5%)
# Score: 4128.0
#
#
#=======================================
BSNT_01278___ 1 GTGTTAGCAATCTTAGGCTTTCTCATGATGCTTGTGTTTATGGCATTGAT 50
|||||||||||||||||||||||.|||||||||||.|||||||...||||
RBAM_007810__ 1 GTGTTAGCAATCTTAGGCTTTCTTATGATGCTTGTTTTTATGGTGCTGAT 50
BSNT_01278___ 51 CATGACAAAACGGCTTTCTGTTTTAACAGCATTAGTTTTGACGCCGATTG 100
.|||||||||||||||||.||.|||||.||..|.||.||.||||||||.|
RBAM_007810__ 51 TATGACAAAACGGCTTTCAGTGTTAACGGCGCTCGTATTAACGCCGATCG 100
BSNT_01278___ 101 TGTTTGCGCTTATCGCCGGATTTGGATTTA--CTGAAGTTGGGGACATGA 148
||||||||||..|.|||||.|||...|||| |.| ||.||.||.||||
RBAM_007810__ 101 TGTTTGCGCTGTTTGCCGGGTTTTCTTTTAACCGG--GTCGGCGAGATGA 148
BSNT_01278___ 149 TGATTTCGGGGATTCAGCAAGTCGCGCCGACTGCGGTCATGATTATGTTT 198
|||||||.||||||.|.||.||.|||||||.|||.|||||||||||||||
RBAM_007810__ 149 TGATTTCCGGGATTGAACAGGTGGCGCCGATTGCAGTCATGATTATGTTT 198
BSNT_01278___ 199 GCGA-TCTTATATTTTGGAATTATGATTGATACAGGCCTGTTTGATCCAA 247
|||| |||| |||||.||.||||||||||||||.||..|.||||||||.|
RBAM_007810__ 199 GCGATTCTT-TATTTCGGCATTATGATTGATACCGGTTTATTTGATCCGA 247
BSNT_01278___ 248 TGGT-TGGCAAAATTTTAAGCATGGTCAAAGGAGACCCTTTAAAAATTGT 296
|||| |.||..|.|||.|||| ||||.|||||.|||||..|.||||||||
RBAM_007810__ 248 TGGTGTCGCGTATTTTAAAGC-TGGTTAAAGGCGACCCGCTCAAAATTGT 296
BSNT_01278___ 297 TGTCGGGACAGCGGTTCTTACAATGCTCGTCGCCTTGGACGGAGATGGCT 346
.|||||.|||||.|||.|.||.|||||.|||||..||||||||||.||||
RBAM_007810__ 297 AGTCGGAACAGCCGTTTTGACCATGCTTGTCGCACTGGACGGAGACGGCT 346
BSNT_01278___ 347 CGACAACGTACATGATTACGACAAGCGCCATGCTTCCGCTCTATTTGCTG 396
||||.|||||.|||||||||||||||||.|||||.||..|.|||.|..||
RBAM_007810__ 347 CGACGACGTATATGATTACGACAAGCGCAATGCTGCCTTTGTATATCATG 396
BSNT_01278___ 397 CTAGGCATCCGGCCAATTATCCTGGCGGGAATCGCGGGAGTCGGCATGGG 446
||.||.|||||.||.|||||..|.|||||||||||.||.|||||||||||
RBAM_007810__ 397 CTCGGAATCCGTCCGATTATTTTAGCGGGAATCGCCGGTGTCGGCATGGG 446
BSNT_01278___ 447 AATCATGAACACAATTCCATGGGGCGGTGCGACGCCGAGGGCGGCGAGTG 496
.|||||||||||.||.|||||||||||.|||||||||.|.||||||||||
RBAM_007810__ 447 TATCATGAACACGATACCATGGGGCGGCGCGACGCCGCGTGCGGCGAGTG 496
BSNT_01278___ 497 CGCTGGGGGTTGATCCAGCTGAGCTTACAGGGCCGATGATTCCTGTCATT 546
||||.||.|||||.||.||.|||||.||.|||||||||.|.|||||||||
RBAM_007810__ 497 CGCTCGGCGTTGACCCGGCAGAGCTGACGGGGCCGATGCTGCCTGTCATT 546
BSNT_01278___ 547 GCAAGCGGGATGCTTTGTATGGTGGCGGTTGCGTATGTGCTTGGAAAAGC 596
||.|||||.|||.|.||||||.|.|.|||.||.|||||.||.||||
RBAM_007810__ 547 GCCAGCGGAATGGTGTGTATGATTGTGGTCGCTTATGTACTCGGAA---- 592
BSNT_01278___ 597 GGAACGAAAG----CGCCTTGGTGTGATTGAACTGAAACAGCCAGCCAAT 642
|||..||||| ||.||.||.|||||.|||.|.||.|||||..||.||
RBAM_007810__ 593 GGATGGAAAGGAAACGGCTCGGGGTGATCGAATTAAAGCAGCCGTCCCAT 642
BSNT_01278___ 643 GCCAATGAACCGGCGGCAGCGGTTGAAGATGAGTGGAAGCGGCCGAAGCT 692
.|.||||||.||||.||.||.|..||||||||.||||.|||||||||.||
RBAM_007810__ 643 ACAAATGAAACGGCTGCGGCTGCGGAAGATGAATGGAGGCGGCCGAAACT 692
BSNT_01278___ 693 TTGGTGGTTCAATTTATTGTTAACGCTTTCTTTAATAGGATGTTTAGTAT 742
.|||||||||||||||.|||||||||||||||||.|.||||.||||||.|
RBAM_007810__ 693 GTGGTGGTTCAATTTACTGTTAACGCTTTCTTTAGTGGGATTTTTAGTGT 742
BSNT_01278___ 743 CGGGTAAAGTTAGTTTAACCGTACTGTTTGTCATTGCGTTTTGTATTGCG 792
|.||.|||||.|.|||||||||.|||||..||||||||||||||||.|||
RBAM_007810__ 743 CAGGAAAAGTGAATTTAACCGTGCTGTTCATCATTGCGTTTTGTATCGCG 792
BSNT_01278___ 793 CTGATTGTGAATTATCCCAATCTCGAGCATCAGAGACAGCGCATCGCGGC 842
||||||||.||.|||||.||.||..|..||||.||..||||.||..|.||
RBAM_007810__ 793 CTGATTGTCAACTATCCGAAGCTTAACGATCAAAGGGAGCGTATTTCAGC 842
BSNT_01278___ 843 GCATTCCAGCAACGTGCTGGCTATCGGTTCAATGATTTTTGCCGCGGGGG 892
.|||||.|||||.|||||.||.||||||||.||||||||||||||.||.|
RBAM_007810__ 843 CCATTCGAGCAATGTGCTTGCGATCGGTTCGATGATTTTTGCCGCAGGTG 892
BSNT_01278___ 893 TGTTCACGGGGATTTTGACAGGCACGAAAATGGTTGATGAAATGGCGATC 942
||||.||.||.|||||.||.||.|||||.|||||||||||.|||||.||.
RBAM_007810__ 893 TGTTTACCGGAATTTTAACGGGGACGAAGATGGTTGATGAGATGGCCATT 942
BSNT_01278___ 943 TCGCTCGTGTCCATGATACCGGAACAAATGGGCGGATTGATCCCAGCGAT 992
||.|||||.||..|.||.||||||||.|||||.|||||.||.||.||.||
RBAM_007810__ 943 TCCCTCGTATCGCTTATTCCGGAACAGATGGGGGGATTTATTCCGGCAAT 992
BSNT_01278___ 993 TGTTGCCTTAACAAGCGGTATTTTCACATTTTTGATGCCGAATGACGCGT 1042
||||||||||||.|||||||||||.||||||.|||||||.||||||||.|
RBAM_007810__ 993 TGTTGCCTTAACGAGCGGTATTTTTACATTTCTGATGCCCAATGACGCCT 1042
BSNT_01278___ 1043 ATTTCTACGGGGTGCTGCCGATTTTATCAGAAACAGCTGTCGCATACGGT 1092
||||.|||||.||||||||.||||||||.||.||.||.||.||.||||||
RBAM_007810__ 1043 ATTTTTACGGCGTGCTGCCCATTTTATCCGAGACCGCCGTGGCGTACGGT 1092
BSNT_01278___ 1093 GTGGATAAAGTGGAAATTGCCAGAGCCTCTATTATCGGCCAGCCGATTCA 1142
||.|||||.||||||||.|||.|.||.||.||.|||||||||||||||||
RBAM_007810__ 1093 GTAGATAAGGTGGAAATCGCCCGCGCTTCGATCATCGGCCAGCCGATTCA 1142
BSNT_01278___ 1143 TATGCTGAGTCCGCTTGTGCCATCCACTCATTTGCTTGTCGGACTCGTCG 1192
||||.|.||.|||||.|||||.||.||.|||||..|.|||||.||.|.||
RBAM_007810__ 1143 TATGTTAAGCCCGCTCGTGCCGTCGACGCATTTATTAGTCGGGCTTGCCG 1192
BSNT_01278___ 1193 GAGTTTCTATTGATGACCATCAAAAATTCGCATTGAAATGGGCGGTTCTC 1242
|.||..|.||||||||.||.||.|||||.||..||||||||||||||||.
RBAM_007810__ 1193 GGGTCACCATTGATGAACACCAGAAATTTGCCATGAAATGGGCGGTTCTT 1242
BSNT_01278___ 1243 GCAGTGATCGTCATGACGGCTATCGCTCTATTGATCGGTGCGATCTCTAT 1292
||.||.||||||||||||||..|.||.||..|.|||||.||.|||.|.||
RBAM_007810__ 1243 GCCGTTATCGTCATGACGGCCTTTGCGCTCATCATCGGCGCAATCACGAT 1292
BSNT_01278___ 1293 TTCCGTATGA 1302
|| |.|.|
RBAM_007810__ 1293 TT---TTTAA 1299
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