Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01306 and RBAM_008000

See Amino acid alignment / Visit BSNT_01306 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:59
# Commandline: needle
#    -asequence dna-align/BSNT_01306___yfkO.1.9828.seq
#    -bsequence dna-align/RBAM_008000___yfkO.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01306___yfkO-RBAM_008000___yfkO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01306___yfkO-RBAM_008000___yfkO.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01306___yfkO
# 2: RBAM_008000___yfkO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 671
# Identity:     532/671 (79.3%)
# Similarity:   532/671 (79.3%)
# Gaps:          10/671 ( 1.5%)
# Score: 2101.0
# 
#
#=======================================

BSNT_01306___      1 ATGGCAGATCTAAAGAAACAAATTCTGGATGCATA-CAATTTCAGGCATG     49
                     |||.|||||..|||..|.||.||..|.||.||.|| ||| |||||.||.|
RBAM_008000__      1 ATGTCAGATAAAAAACAGCAGATCATCGAAGCGTATCAA-TTCAGACACG     49

BSNT_01306___     50 CGACTAAGGAATTTGACCCGAATAAAAAAGTGTCAGACAGCGATTTTGAA     99
                     |.||.|||||||||||.||..|.||||||.|.|||||.||||||||||||
RBAM_008000__     50 CCACAAAGGAATTTGATCCTGAGAAAAAAATTTCAGAAAGCGATTTTGAA     99

BSNT_01306___    100 TTTATTTTAGAAACAGGAAGACTGTCTCCGAGCTCACTCGGCCTTGAGCC    149
                     ||.|||||||||||.||||||.|.||.||.|||||||||||..|.|||||
RBAM_008000__    100 TTCATTTTAGAAACGGGAAGATTATCCCCAAGCTCACTCGGTTTGGAGCC    149

BSNT_01306___    150 TTGGAAATTTGTCGTCGTCCAAAATCCGGAGTTCCGCGAGAAGCTTCGTG    199
                     ||||||||||||||||||.||||||||||||.|.||.||.||.||.||.|
RBAM_008000__    150 TTGGAAATTTGTCGTCGTTCAAAATCCGGAGCTTCGTGAAAAACTCCGCG    199

BSNT_01306___    200 AATACACATGGGGCGCGCAAAAGCAGCTGCCGACCGCAAGCCATTTCGTC    249
                     |.|.|||||||||||||||||||||||||||||||||||||||||||||.
RBAM_008000__    200 AGTTCACATGGGGCGCGCAAAAGCAGCTGCCGACCGCAAGCCATTTCGTA    249

BSNT_01306___    250 CTGATTCTTGCGCGTACAGCGAAGGATATCAAATATAATGCGGACTACAT    299
                     ||..|.|||||.||.||.||.|||||||||...|.|.|.||.|||||..|
RBAM_008000__    250 CTTCTGCTTGCCCGGACGGCAAAGGATATCCGTTTTGACGCCGACTATGT    299

BSNT_01306___    300 CAAACGTCATTTAAAAGAAGTAAAACAAATGCCTCAAGACGTGTACGAAG    349
                     ||||..|||.||....|||||.|||.|||||||..||||..||||.||||
RBAM_008000__    300 CAAAAATCACTTGCGGGAAGTCAAAAAAATGCCGGAAGATATGTATGAAG    349

BSNT_01306___    350 GCTATTTAAGCAAAACAGAAGAATTCCAGAAAAACGATTTGCATTTGCTT    399
                     |||||.|.||||||||.|||||.|||||||||||.|||||..|||||||.
RBAM_008000__    350 GCTATATCAGCAAAACGGAAGACTTCCAGAAAAATGATTTCAATTTGCTA    399

BSNT_01306___    400 GAAAGTGACAGA----ACATTGTTTGACTGGGCATCAAAACAAACCTATA    445
                     |||    .||||    .|..||||||||||||||||.|||||.||.||.|
RBAM_008000__    400 GAA----TCAGATCGCGCGCTGTTTGACTGGGCATCCAAACAGACTTACA    445

BSNT_01306___    446 TCGCGCTTGGCAACATGATGACTGCCGCTGCGCAAATCGGTGTTGATTCC    495
                     ||||.||.|||||.||||||||.|||||||||||.|||||..|.||.|||
RBAM_008000__    446 TCGCCCTCGGCAATATGATGACAGCCGCTGCGCAGATCGGAATCGACTCC    495

BSNT_01306___    496 TGCCCGATCGAAGGCTTCCAGTACGATCACATTCACCGTATTCTTGAAGA    545
                     |||||..|.|||||||||.|.|||.|..|.||||||||.|||||||||||
RBAM_008000__    496 TGCCCTGTAGAAGGCTTCAACTACAAAGAAATTCACCGGATTCTTGAAGA    545

BSNT_01306___    546 AGAAGGCCTTCTGGAAAACGGAAGCTTTGATATTTCTGTGATGGTGGCAT    595
                     ||||||.|||||||||||||||||.||.||.||.|||||.||||..||||
RBAM_008000__    546 AGAAGGGCTTCTGGAAAACGGAAGTTTCGACATCTCTGTTATGGCCGCAT    595

BSNT_01306___    596 TCGGCTACCGTGTGAGAGACCCTCGTCCGAAAACAAGATCTGCTGTTGAA    645
                     |||||||||||||.|||||.||.||.|||||||||||||||||.....||
RBAM_008000__    596 TCGGCTACCGTGTCAGAGAACCGCGCCCGAAAACAAGATCTGCCTCAAAA    645

BSNT_01306___    646 GATGTTGTGAAATGGGTGTAA    666
                     ||.|||||.||.|||||.|||
RBAM_008000__    646 GACGTTGTAAAGTGGGTATAA    666


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