Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01316 and RBAM_008090

See Amino acid alignment / Visit BSNT_01316 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:00
# Commandline: needle
#    -asequence dna-align/BSNT_01316___yfkL.1.9828.seq
#    -bsequence dna-align/RBAM_008090___yfkL.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01316___yfkL-RBAM_008090___yfkL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01316___yfkL-RBAM_008090___yfkL.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01316___yfkL
# 2: RBAM_008090___yfkL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1359
# Identity:     763/1359 (56.1%)
# Similarity:   763/1359 (56.1%)
# Gaps:         333/1359 (24.5%)
# Score: 1874.5
# 
#
#=======================================

BSNT_01316___      1 ATGCAAACGACATCT--ATCAAAACAGCATCCGGAATGTATATCAACTAC     48
                     |||.|||  ||||.|  |.|||||..|||.|.||..|.|||||.||.||.
RBAM_008090__      1 ATGAAAA--ACATATACACCAAAATGGCAGCGGGTCTTTATATTAATTAT     48

BSNT_01316___     49 TTCTTTCTGGGGATGGTCAACATCATTCTCGCATCCAATATGTCTTCATT     98
                     |||.|.|||||.|||.||||.||.|||.||||||||||||||....||||
RBAM_008090__     49 TTCCTGCTGGGCATGATCAATATTATTATCGCATCCAATATGGAGGCATT     98

BSNT_01316___     99 AACAAAACAGTGGAATACCGATCCG--ACCGGCATCAGTTATGTCATTG-    145
                     |.||||||||....||||  |||||  .||||..||||.|||    ||| 
RBAM_008090__     99 ATCAAAACAGCTTCATAC--ATCCGCAGCCGGGGTCAGCTAT----TTGG    142

BSNT_01316___    146 ---CCGCTATCGGGTTTGGCAAACTGCTGACATACGGCATTTCCGGC---    189
                        ||||.||||||.|.||.||.|||            |||||  ||   
RBAM_008090__    143 TCTCCGCCATCGGGATCGGGAAGCTG------------ATTTC--GCTTC    178

BSNT_01316___    190 -GTT----------CTATCAGATAAAATCGGCAGAAAGCCGCTTGT--TG    226
                      |||          ||.||.||||.|.||||.|||..||||.||.|  ||
RBAM_008090__    179 TGTTTGCCGGGAAGCTTTCGGATACATTCGGGAGACGGCCGTTTATCGTG    228

BSNT_01316___    227 TCG------CTTCTGCGGGAATTATGGCCGTCTTTT--TAGTCGGTATTC    268
                     |||      .|||||       |||   |...||||  ||.||||.||||
RBAM_008090__    229 TCGGGCGCCTTTCTG-------TAT---CTGATTTTCCTAATCGGAATTC    268

BSNT_01316___    269 CTTTATCACCGAGCTATGAGCTGGCGTTTGTGTTCGCCTTATTAGCCGGA    318
                     |..|.||..|.|.||||..|...||||||.|.||||||.|.||.|||||.
RBAM_008090__    269 CGCTTTCGACAAACTATACGGCCGCGTTTATCTTCGCCATTTTCGCCGGG    318

BSNT_01316___    319 GTCGCAAATTCAGCGATGGATGCCGGAACATATCCGGCCCTAACCGAGCT    368
                     .||||.|||||.....|||||.||||.|||||||||||.||.|..||...
RBAM_008090__    319 ATCGCCAATTCCTTTTTGGATTCCGGGACATATCCGGCGCTTATTGAAGG    368

BSNT_01316___    369 CTTTCCG------------TCTGCTTCCG-GTTCGGCGAATGTCTTGGTC    405
                     .||||||            |||||..||| |||     ||        ||
RBAM_008090__    369 ATTTCCGAAAAACGCAAGCTCTGCAACCGTGTT-----AA--------TC    405

BSNT_01316___    406 AAAGCCTTTATGTCTGTCGGGGCCGCACTTTTGCCGCTTTTGATCACATT    455
                     |||||.|||.|.||..||||.||..|..|..|.|||.||||.|||.|.||
RBAM_008090__    406 AAAGCGTTTGTATCCATCGGCGCGACGGTGCTTCCGTTTTTCATCGCGTT    455

BSNT_01316___    456 TTTAGCAGACCACA-GCA--TGTTTTACG-------GATTTGC-------    488
                     |.|.||.|   ||| |||  |||||||||       |.|||.|       
RBAM_008090__    456 TATTGCGG---ACAGGCATTTGTTTTACGGCTGGACGTTTTTCGTACCGG    502

BSNT_01316___    489 ---TTTTTATCTGCCGGCAGCGGTCTATCTCCTGAATATTATTTATTTAT    535
                        ||.||.|||.||.| |.||| ||.|.|||||            ||| 
RBAM_008090__    503 GCATTATTTTCTTCCTG-AACGG-CTTTTTCCTG------------TTA-    537

BSNT_01316___    536 CAACGCTTTCGTTTCCTAAAAAACATAAGAAACCAACTAATA--GCGGCC    583
                      ||.| ||.|||||||   .||.||||||.||  ||..||.|  ||||||
RBAM_008090__    538 -AAAG-TTCCGTTTCC---GAATCATAAGCAA--AAAGAAGACGGCGGCC    580

BSNT_01316___    584 -AACAGGAA---TCTCCCGTTTTCTTGTCTGA--ACCCGTT----TTTCA    623
                      .|| ||||   |||||         ||||||  ||.||||    ||.||
RBAM_008090__    581 GGAC-GGAAGCCTCTCC---------GTCTGATGACGCGTTCACATTACA    620

BSNT_01316___    624 ------GAAA------GAAGGCACCGCACTGATTATCATCGGTTTTACAT    661
                           ||.|      ||||||...||..|.|||.|..|.||.|||.|||
RBAM_008090__    621 GCCGTCGATATGGCGCGAAGGCCTTGCGATCATTCTGTTAGGCTTTTCAT    670

BSNT_01316___    662 CCACGGCTTTATTTACGGTTTCTCAAATCTGGCTCCCGAGCTACGCGCAA    711
                     |.|||||..|.||||.|.|...||||.|.|||||.||.|..|.||.||||
RBAM_008090__    671 CTACGGCGCTGTTTATGCTCGTTCAAGTATGGCTTCCTAAGTTCGGGCAA    720

BSNT_01316___    712 AAAGCAGCCGGTTTAGCTGAATCAGCAT--------------CTGTACAA    747
                     |      |||.|||.|        ||||              ||||..||
RBAM_008090__    721 A------CCGTTTTGG--------GCATGCCTGAGGTGCAGGCTGTCAAA    756

BSNT_01316___    748 CTGCTGAGCTATTATAGTATAGGATCTCTGGCATCTGTTTTATTATTAGC    797
                     .||.||||||||||.||.||.||..|.||.|..||.||.|||||..|.||
RBAM_008090__    757 TTGTTGAGCTATTACAGCATCGGTGCGCTTGTGTCCGTATTATTGCTGGC    806

BSNT_01316___    798 CGTTTTGCTGAACAGATGGGTCAAACCTGTCTTCA-----------TAAC    836
                     |||..||.|.||||||   ||.|        ||||           |||.
RBAM_008090__    807 CGTGCTGTTAAACAGA---GTGA--------TTCAGCCGATTACGGTAAT    845

BSNT_01316___    837 GCTCTTATATCCTATTAT--------------TACTTTATGTACGCTC--    870
                     |.|..|.||.|||.|.||              |.|||       ||||  
RBAM_008090__    846 GGTGCTGTACCCTGTGATCGCAGCAATCGCGCTGCTT-------GCTCTG    888

BSNT_01316___    871 ----GCAGTCAT--GCTGACCGTTCACATCCCAGTTGTGCTGGACATCA-    913
                         .||.||||  ||.|.||||    ||  ||||         ||||| 
RBAM_008090__    889 ATTTTCATTCATCAGCCGGCCGT----AT--CAGT---------CATCAG    923

BSNT_01316___    914 CTGCCTTTTTCTTAGGCTTTTCAACTGCGGGTGTGTTTCAAATTACCATT    963
                     || |||||.||.|.||..|||||||||||||..|..|.|||.|..|.||.
RBAM_008090__    924 CT-CCTTTGTCATCGGACTTTCAACTGCGGGCATTCTGCAATTGGCGATG    972

BSNT_01316___    964 ACGTTAATGACAGAGCTTTT-----CTGGAAGCGA-AAAGGAACCGTTAC   1007
                     |||.|.|||.|.|   ||||     ||..||   | |||||.||..|.||
RBAM_008090__    973 ACGGTTATGGCTG---TTTTATTCCCTAAAA---ATAAAGGTACGATCAC   1016

BSNT_01316___   1008 CGGAA----TTGTAGCGACCGCTTCAAGTCTTGCATC---GATTCTGCTG   1050
                         |    ||||....|..||.||||| |||  |||   .|||.|..|.
RBAM_008090__   1017 ----ATCTTTTGTTAATATAGCATCAAG-CTT--ATCTTTTATTGTCATT   1059

BSNT_01316___   1051 CCGATTGCAACAGG-GC-TTATCGCAAAAGCGGGGGGCATCGCTCATATT   1098
                     |||.|||.|||.|| || .|||  |.|||||||..|||.|..|.|.|.||
RBAM_008090__   1060 CCGCTTGTAACGGGAGCGATAT--CCAAAGCGGCCGGCCTGACGCCTGTT   1107

BSNT_01316___   1099 TTCATATTCGACTTCGCCATTGCGGTTATCGGAA---CGGCTG-CAGCTG   1144
                     |     |||..|||          |.||||||||   ||||.| ||||..
RBAM_008090__   1108 T-----TTCTGCTT----------GATATCGGAATTGCGGCCGTCAGCGC   1142

BSNT_01316___   1145 CTTTC-----TTGTATTA-------CAGGTACAAGAAACTGACAGGTGCT   1182
                     |.|||     |||| |||       |.|.|..|||.||.|||    ||  
RBAM_008090__   1143 CCTTCTCGCATTGT-TTATCGGAATCCGCTTTAAGCAAGTGA----TG--   1185

BSNT_01316___   1183 CAAGCCTAA   1191
                     .||||||.|
RBAM_008090__   1186 AAAGCCTGA   1194


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