Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01327 and RBAM_008160

See Amino acid alignment / Visit BSNT_01327 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:01
# Commandline: needle
#    -asequence dna-align/BSNT_01327___yfkD.1.9828.seq
#    -bsequence dna-align/RBAM_008160___yfkD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01327___yfkD-RBAM_008160___yfkD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01327___yfkD-RBAM_008160___yfkD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01327___yfkD
# 2: RBAM_008160___yfkD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 802
# Identity:     637/802 (79.4%)
# Similarity:   637/802 (79.4%)
# Gaps:          17/802 ( 2.1%)
# Score: 2510.0
# 
#
#=======================================

BSNT_01327___      1 ATGATGAAAAAGCTATTTCATTCCACACTTATCGTGTTGTTATTCTTTAG     50
                        ||||.||||||.||||||.|||||||.||..||.||||||.||||||
RBAM_008160__      1 ---ATGAGAAAGCTGTTTCATGCCACACTGATTCTGCTGTTATCCTTTAG     47

BSNT_01327___     51 TTTTTTCG----GCGTTCAGCCCATCCACGCGAAAAAGCAGTTTAAGGTT     96
                     ||||||||    ||..||.|||..|    ||.|||||.|.||||||.|||
RBAM_008160__     48 TTTTTTCGCAACGCCGTCTGCCGCT----GCAAAAAAACCGTTTAAAGTT     93

BSNT_01327___     97 CCTAATTCTGTCGCAAGCATTTCAAAGGAAAACACGTATCCGAATGCTTC    146
                     ||.||.|||||||.|||||||||||||||.||.|||||||||||||||||
RBAM_008160__     94 CCCAACTCTGTCGTAAGCATTTCAAAGGAGAATACGTATCCGAATGCTTC    143

BSNT_01327___    147 GCAGGATCAGCCAATGCTTCAGCCGAGCAAGCTGGCAAAGGAATTGCTCG    196
                     .|||||.|||||.|||||||||||||||||.|||||||||||||||.|.|
RBAM_008160__    144 ACAGGACCAGCCGATGCTTCAGCCGAGCAAACTGGCAAAGGAATTGTTAG    193

BSNT_01327___    197 AT-CATTCTGAGGTGAAGATTGAAAATCCGCATCTCATCAAAATGCTGAA    245
                     || || ||.|||.|.||.||.||||||||||||||.||.||.||||||||
RBAM_008160__    194 ATACA-TCCGAGATCAACATCGAAAATCCGCATCTGATAAAGATGCTGAA    242

BSNT_01327___    246 TGAATCCAACATATCCGGCACACCGCTTGCAGTAGGGTACCGGGCGACAA    295
                     |||||||....|.|||||..||||||||||..|.||.|||||||||||||
RBAM_008160__    243 TGAATCCTCGGTTTCCGGTTCACCGCTTGCCATCGGATACCGGGCGACAA    292

BSNT_01327___    296 TATTTCTCGGGAAATGGGCGCTCGGCTATGAATCAAATGAAACAGTCGCA    345
                     |||||||||||||||||||||||||||||.||||.||.|||||.|||||.
RBAM_008160__    293 TATTTCTCGGGAAATGGGCGCTCGGCTATCAATCGAACGAAACGGTCGCC    342

BSNT_01327___    346 AACTGGGAGTATAAAAAAATCAATACAAACCGTGCGGATAACCGCGGCGG    395
                     ||||||||.||||||||||||||.||||||.|.|||||||||||.||| |
RBAM_008160__    343 AACTGGGAATATAAAAAAATCAACACAAACAGAGCGGATAACCGGGGC-G    391

BSNT_01327___    396 GAAAG-AAACGGCTGAAAT-GCATTATGCCCAGGAACAGCAGTACAGAGT    443
                     ||.|| ||||.||.|..|| .|| ||.|||||.||||||||.||||.|.|
RBAM_008160__    392 GACAGCAAACCGCGGTTATCTCA-TACGCCCAAGAACAGCAATACAAAAT    440

BSNT_01327___    444 GAAGGGCGGCCTGACAGCTAAAGTTCCAAATGCTGAAGATGTCAAAAGCA    493
                     .||.|||||.||.|||||.||.||.||.||.||.|||||.||.|||||||
RBAM_008160__    441 CAAAGGCGGGCTCACAGCGAAGGTGCCGAACGCAGAAGACGTAAAAAGCA    490

BSNT_01327___    494 TGATGATGCAAAAAGCAATGAAGAAAACGAACCTTCCGCTTGCATTTGAG    543
                     ||||||||||||||||.|||||||||||.||.||.|||||.||.|||||.
RBAM_008160__    491 TGATGATGCAAAAAGCGATGAAGAAAACAAAACTGCCGCTCGCGTTTGAA    540

BSNT_01327___    544 ACGGTCATTGGGGCTGGCACAAAACGGGATCAGATTTATAAAGTCGCTCC    593
                     |||||.||.||.||.|||||||||||.|||||.|..||.|||.|..||||
RBAM_008160__    541 ACGGTTATCGGCGCAGGCACAAAACGCGATCAAACCTACAAAATTTCTCC    590

BSNT_01327___    594 TAAAAAAATCGGTTATTTACATGCATATGCACCGGCTGTGAATGAAAAAG    643
                     ..|.....||||.||..|.|||||.||.||.|||||.||.||||||||||
RBAM_008160__    591 GCAGCGGCTCGGCTACCTCCATGCCTACGCTCCGGCCGTTAATGAAAAAG    640

BSNT_01327___    644 GAAAAGTGACTTACGGAGAAGTGTACTTAGTGCTGAAAGGAAATAAACGA    693
                     |||||||.||.|||||.||||||||.||.|||||||||||.|..||.||.
RBAM_008160__    641 GAAAAGTAACATACGGTGAAGTGTATTTGGTGCTGAAAGGCAGCAAGCGG    690

BSNT_01327___    694 AAACTCGTCGTGAAAAATGTCACGTCACAGGGAATCGGCGCGTGGATTCC    743
                     |||||.|||||.||||||||.||.||.||.||||||||.||.||||||||
RBAM_008160__    691 AAACTTGTCGTCAAAAATGTGACTTCGCAAGGAATCGGAGCTTGGATTCC    740

BSNT_01327___    744 AGTTCAAGATCATGTCACGTTTGGTTTTCAGCTTTCCTCACTGCCAAGAT    793
                     .||.||.|||||.|||||.||.||||||||..|..|..|.|.|||.||||
RBAM_008160__    741 GGTGCAGGATCACGTCACATTCGGTTTTCAAATGACAGCGCAGCCGAGAT    790

BSNT_01327___    794 AA    795
                     ||
RBAM_008160__    791 AA    792


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_01327 and RBAM_008160

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
