Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01336 and RBAM_008230

See Amino acid alignment / Visit BSNT_01336 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:02
# Commandline: needle
#    -asequence dna-align/BSNT_01336___yfjQ.1.9828.seq
#    -bsequence dna-align/RBAM_008230___yfjQ.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01336___yfjQ-RBAM_008230___yfjQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01336___yfjQ-RBAM_008230___yfjQ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01336___yfjQ
# 2: RBAM_008230___yfjQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 977
# Identity:     732/977 (74.9%)
# Similarity:   732/977 (74.9%)
# Gaps:          34/977 ( 3.5%)
# Score: 2675.5
# 
#
#=======================================

BSNT_01336___      1 ATGATCAACATTACCGCAATCACAACAGAGCATCAGCTGCTGAAAAATAT     50
                     |||||..|.||.|||||||||||||||.|..||.||.|..|..|.|||||
RBAM_008230__      1 ATGATACATATAACCGCAATCACAACACATAATGAGATATTAGATAATAT     50

BSNT_01336___     51 --ACCGATCGAACGAGTGGAACAGCCTGATATTGCATGGTACTGGGTTGA     98
                       .||.|||  |||....|||||.||.||.||.||||||||||||.||||
RBAM_008230__     51 CCCCCTATC--ACGTACAGAACAACCGGACATCGCATGGTACTGGATTGA     98

BSNT_01336___     99 TTTTTACGGCCCGGAGGATAC-GGAAACGGCGTTATTGAGAGATTTTTTT    147
                     |||||.||||.|.|| |||.| .|||||.|.|.|..||.|.||||.||||
RBAM_008230__     99 TTTTTTCGGCGCTGA-GATGCATGAAACCGAGCTGCTGCGTGATTATTTT    147

BSNT_01336___    148 CATTTTCACCCGCTTGCCATTGAGGATTGCTTCCAGCACATGCAGCGGCC    197
                     ||.|||||.||||||||.||.|||||||||||.|||||.|||||||||||
RBAM_008230__    148 CACTTTCATCCGCTTGCGATCGAGGATTGCTTTCAGCATATGCAGCGGCC    197

BSNT_01336___    198 GAAGCTTGACCATTATGACGGCTATCGTTTTTACGTGATTCATGCGCTGA    247
                     |||..|.|||||||||||||||||.||||||||.|||.|.||.||.||||
RBAM_008230__    198 GAAAATCGACCATTATGACGGCTACCGTTTTTATGTGCTCCACGCTCTGA    247

BSNT_01336___    248 ATAAGGAAACACTTGAGACGGAGGAAGTCGATATCTTTCAAGGCGAAAAA    297
                     |...|||.|||||.||.|.|||.||.||.||.||.|||||...|||....
RBAM_008230__    248 ACCCGGACACACTGGAAATGGAAGAGGTGGACATTTTTCAGTCCGACCGT    297

BSNT_01336___    298 TTTGTCGTCACCTTTCATTTACACGAAACGCCAGGTATCGCTAAAGTCCG    347
                     ||..||||||.|||.|||||.||||||.||||.||..||.|.||.||..|
RBAM_008230__    298 TTCATCGTCAGCTTCCATTTGCACGAATCGCCCGGCGTCTCAAAGGTGAG    347

BSNT_01336___    348 GGAGCGTTTGTATGCTTCACC-GGATATATTGAAAAAAGGGCCCGGGCAT    396
                     .||.||.||.|..|||||.|| |||| ||...|||||||||||||||||.
RBAM_008230__    348 AGAACGGTTTTTCGCTTCTCCGGGAT-TAGCCAAAAAAGGGCCCGGGCAC    396

BSNT_01336___    397 ATTTCTTATATGATCATGGATCAGCTTGTTGATGAATATTTTCCTCTCGT    446
                     ||..||||||||||.||||||||||||||.|||||||||||.||..|..|
RBAM_008230__    397 ATCACTTATATGATGATGGATCAGCTTGTCGATGAATATTTCCCCGTGCT    446

BSNT_01336___    447 GTATAAAATCGAAGACCGGCTGAATGAAATTGAAGAAAGCCGTCCCCACA    496
                     |||.|||||.||||||||||||||||||||||||||.|||.|..||||.|
RBAM_008230__    447 GTACAAAATTGAAGACCGGCTGAATGAAATTGAAGACAGCAGAACCCATA    496

BSNT_01336___    497 AAACGTATGGAATGCTGATGAACGAGGTGTTTGATCTCAGAACAGACCTA    546
                     ||.|.||.||.|...|.|||||.||.||||||||..|..|.||.||.||.
RBAM_008230__    497 AATCTTACGGCACTTTAATGAATGAAGTGTTTGAATTGCGGACTGATCTT    546

BSNT_01336___    547 TTGCATTTAAGACGGACGATTATCCCGATGCGTGATTTGCTCTACCGGAT    596
                     |||.|..|.||.||||||||.||.||||||||.|||||..|.||||||||
RBAM_008230__    547 TTGAACCTGAGGCGGACGATCATTCCGATGCGCGATTTAATGTACCGGAT    596

BSNT_01336___    597 TTTAAGCCTTGACCATGTGAAAG--AGCAGCGGGAGACGAAAGCCTATTT    644
                     |||.||||||||||||||.||||  |||  ||.||.||||||||.|||||
RBAM_008230__    597 TTTGAGCCTTGACCATGTAAAAGAAAGC--CGTGAAACGAAAGCGTATTT    644

BSNT_01336___    645 CAGCGACATATATGATCATTTGTTAAAGTTGTCTGAAATTGTGGAATCCA    694
                     ||||||.||.|||||.||..|||||||..||.||||..|..|.||.||.|
RBAM_008230__    645 CAGCGATATTTATGACCACCTGTTAAAACTGGCTGAGCTGATCGAGTCAA    694

BSNT_01336___    695 ACCGTGACATGACGTCCGACTTGCGTGACAGCTACGTGACGCTAAACTCA    744
                     |||||||.||||||||.||.|||||.||||||||.||||||||.||.|||
RBAM_008230__    695 ACCGTGATATGACGTCAGATTTGCGAGACAGCTATGTGACGCTGAATTCA    744

BSNT_01336___    745 AACCGGATGAATGCGATTATGATGACACTGACGATCGTATCAACCATTTT    794
                     |||||||||||.||.||||||||||||.|.||.|||||.||.||||||||
RBAM_008230__    745 AACCGGATGAACGCCATTATGATGACATTAACCATCGTCTCGACCATTTT    794

BSNT_01336___    795 CATCCCGCTCACCTTTATTACCGGTGTATACGGTATGAACTTCGACTTTA    844
                     .||||||||.||.||.||..|.||.||.|||||.|||||.|||||....|
RBAM_008230__    795 TATCCCGCTGACGTTCATCGCGGGGGTTTACGGCATGAATTTCGATAACA    844

BSNT_01336___    845 TGCCGGAGCTGCATTGGAAATACGGATATT---TCGCTGTACTT-GGCCT    890
                     ||||.|||||.||||||||||||||.||||   |||.|    || |||.|
RBAM_008230__    845 TGCCTGAGCTTCATTGGAAATACGGGTATTTTATCGTT----TTGGGCGT    890

BSNT_01336___    891 GATGGCTGCGCTTGTGATTGGAATGCTGATTTGGTTTAGATAT-------    933
                     .|||||.|..||||||...|..||||||.||||||       |       
RBAM_008230__    891 AATGGCCGTTCTTGTGGCCGCCATGCTGTTTTGGT-------TCGCCCGC    933

BSNT_01336___    934 AAAGGATGGTTCAATATTTTTAAATGA    960
                     |||||.|||||.||||||||.||.|.|
RBAM_008230__    934 AAAGGCTGGTTTAATATTTTCAAGTAA    960


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