Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_01338 and RBAM_008250

See Amino acid alignment / Visit BSNT_01338 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:02
# Commandline: needle
#    -asequence dna-align/BSNT_01338___yfjO.1.9828.seq
#    -bsequence dna-align/RBAM_008250___yfjO.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01338___yfjO-RBAM_008250___yfjO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01338___yfjO-RBAM_008250___yfjO.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01338___yfjO
# 2: RBAM_008250___yfjO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1405
# Identity:    1181/1405 (84.1%)
# Similarity:  1181/1405 (84.1%)
# Gaps:           8/1405 ( 0.6%)
# Score: 4999.0
# 
#
#=======================================

BSNT_01338___      1 GTGAACCAACAAAAGAAACAGGCGCCCGTCGAACTGAAGGTCGGACAAAC     50
                     |||||.|||||..|.|||.|||||||.|.||||.||||..|||||||.||
RBAM_008250__      1 GTGAATCAACATCAAAAAAAGGCGCCTGCCGAATTGAAAATCGGACAGAC     50

BSNT_01338___     51 CTTTCCGCTGACGATTAAGCGTCTCGGCATTAACGGAGAAGGTGTCGGCT    100
                     .|||||||||||.||.||.||||||||||||||||||||.||.|||||||
RBAM_008250__     51 ATTTCCGCTGACCATCAAACGTCTCGGCATTAACGGAGAGGGCGTCGGCT    100

BSNT_01338___    101 ATTTTAAGAAAAAAGTCGTCTTCGTGCCCGGCGCGCTTCCTGGCGAAGAA    150
                     ||||||||||||||||.||||||||.||||||||.||.||.||.||||||
RBAM_008250__    101 ATTTTAAGAAAAAAGTTGTCTTCGTTCCCGGCGCTCTGCCCGGTGAAGAA    150

BSNT_01338___    151 GTTGTTGTGCAGGCCACAAAGGTCCAGCCGAAGTTTTCGGAGGGCCGCAT    200
                     ||.||||...|.||.|||||.||.||||||||.|||||.||.|..|||.|
RBAM_008250__    151 GTCGTTGCCGAAGCGACAAATGTGCAGCCGAAATTTTCAGAAGCACGCGT    200

BSNT_01338___    201 TAAGAAAATCCGCAAGGCGTCTGAGCACCGGGTGGCACCGCCTTGCCCTG    250
                     .||.||||||||||||.|||||||.|||||.||..|.|||||.|||||.|
RBAM_008250__    201 CAAAAAAATCCGCAAGCCGTCTGAACACCGCGTCACGCCGCCATGCCCGG    250

BSNT_01338___    251 TTTATGAGCAATGCGGCGGCTGCCAGCTTCAGCACCTTGCATACAGCCAG    300
                     |.|||||.||.|||||||||||.|||||||||||.||.|||||||.||||
RBAM_008250__    251 TCTATGACCAGTGCGGCGGCTGTCAGCTTCAGCATCTGGCATACACCCAG    300

BSNT_01338___    301 CAGCTTCGGGAAAAACGCGATATCGTCATTCAGTCTCTTGAACGCCATAC    350
                     ||||||||.|||||||||||.|||||||||||||||||.|||||.|||||
RBAM_008250__    301 CAGCTTCGCGAAAAACGCGACATCGTCATTCAGTCTCTGGAACGTCATAC    350

BSNT_01338___    351 GAAGTTTAAAGTTGAAAACATGGAAATCAAAGAAACGATTGGCATGGACA    400
                     ||..||.||.||.|||.|.|||.|.||.|||||.|||||.||.|||||||
RBAM_008250__    351 GAGATTCAATGTCGAAGAAATGAACATTAAAGATACGATCGGAATGGACA    400

BSNT_01338___    401 ACCCGTGGAATTACCGCAATAAAAGCCAATTCCAGATCGGACGCTCGCAA    450
                     ||||.|||||||||||.||.||||||||.|||||..||||||||||||||
RBAM_008250__    401 ACCCTTGGAATTACCGGAACAAAAGCCAGTTCCAAGTCGGACGCTCGCAA    450

BSNT_01338___    451 AGTGGGAGCATCATCGCCGGCTTATACGGCCTTGATTCTCATGATATCGT    500
                     ||.||.||||||||.||||||||||||||.||||||||.|||.|.|||||
RBAM_008250__    451 AGCGGCAGCATCATTGCCGGCTTATACGGACTTGATTCCCATAAAATCGT    500

BSNT_01338___    501 GCCGATTAAAGACTGTATCGTTCAGCATCCGGCAACGAACAAAACAACAG    550
                     .||||||||.||.||.||.||.|||||||||||.||.|||||||||||.|
RBAM_008250__    501 TCCGATTAAGGAATGCATTGTCCAGCATCCGGCGACAAACAAAACAACGG    550

BSNT_01338___    551 GCATCGTCCGCCGCATTTTAGAGGACTTCAATGTGTCTGTTTATAATGAA    600
                     |.|||||||||||.|||||.||..|...|||.||.||.||||||||.|||
RBAM_008250__    551 GTATCGTCCGCCGTATTTTGGAAAAACACAACGTATCCGTTTATAACGAA    600

BSNT_01338___    601 AGAA--AACGAAAAGGCGACGTTCGCACGATCGTGACGAGAGTCGGCTTT    648
                     .|.|  ||  |||||||||.||.|||||.|||||||||||||||||.|||
RBAM_008250__    601 CGGACCAA--AAAAGGCGATGTCCGCACCATCGTGACGAGAGTCGGTTTT    648

BSNT_01338___    649 GAAACAGGCGAAGTGCAGGTCGTGCTTGTAACTGCAAAAGAAACGCTTCC    698
                     |||||||||||||||||||||||||||||.||.||.|||||.||.||.||
RBAM_008250__    649 GAAACAGGCGAAGTGCAGGTCGTGCTTGTCACCGCGAAAGAGACACTGCC    698

BSNT_01338___    699 GCACAAGGAAGAAATCGTCAAAGCGATTCAAAAGCGATTGCCAGAGGTCA    748
                     |.|.||.||.||.|||||||||||.||||||||.||.|||||.||.||.|
RBAM_008250__    699 GAATAAAGACGAGATCGTCAAAGCCATTCAAAACCGTTTGCCGGAAGTGA    748

BSNT_01338___    749 AATCCATTATTCAGAATGTAAACGGGGCGAAAACCTCAGTGATTTTTGGT    798
                     ||||.||||||||.||.||.|||||.|||...||.||.||.|||||.|||
RBAM_008250__    749 AATCGATTATTCAAAACGTCAACGGCGCGCGCACATCCGTCATTTTCGGT    798

BSNT_01338___    799 GAGAAAACAAAACAGCTCGCCGGAAAAACAGTG--ATTCAAGAAGTGCTC    846
                     ||.|||||||||..|||.|||||  ||.|..||  |||||||||||||||
RBAM_008250__    799 GACAAAACAAAAGCGCTGGCCGG--AAGCCATGCCATTCAAGAAGTGCTC    846

BSNT_01338___    847 GGCGACGTATCTTTTGAATTGAGCGCCCGCGCTTTCTTCCAGCTCAATCC    896
                     ||||||||.||.||||||.|||||||||||||.||||||||||||||.||
RBAM_008250__    847 GGCGACGTGTCATTTGAACTGAGCGCCCGCGCCTTCTTCCAGCTCAACCC    896

BSNT_01338___    897 GGAACAGACCGTCAAGCTGTATGATGAAGTGAAAAAAGCGGCGCAGCTGA    946
                     .||.|||||.||||||||||||||.|||||||||.|||||||.|||||||
RBAM_008250__    897 TGAGCAGACGGTCAAGCTGTATGACGAAGTGAAACAAGCGGCTCAGCTGA    946

BSNT_01338___    947 CCGGAAAAGAAAAAGTCGTTGATGCGTATTGCGGCGTCGGCACTATCGGC    996
                     |.|||||||||||||||||.||.|||||||||||||||||.||.||||||
RBAM_008250__    947 CAGGAAAAGAAAAAGTCGTAGACGCGTATTGCGGCGTCGGTACGATCGGC    996

BSNT_01338___    997 ATGTGGGTTGCGGACGGAGCGAAGGAAGTCCGCGGCATGGACGTCATCAA   1046
                     ||||||||..|...|||.||.||.||..|||||||||||||||||||.||
RBAM_008250__    997 ATGTGGGTCTCAAGCGGCGCAAAAGAGATCCGCGGCATGGACGTCATTAA   1046

BSNT_01338___   1047 GGAATCAATTGACGATGCCAAGAAAAACGCCAAAAAACACGGCATGGCAA   1096
                     .|||||||||||||||||.||||||||||||||||||||||||||...||
RBAM_008250__   1047 AGAATCAATTGACGATGCGAAGAAAAACGCCAAAAAACACGGCATCAAAA   1096

BSNT_01338___   1097 ATGCCACATACGTAACAGGAACAGCCGAGCACTGGCTCCCGAAATGGACG   1146
                     |.||..||||.||.||||||||||||||.|||||||||||||||||||||
RBAM_008250__   1097 ACGCGGCATATGTCACAGGAACAGCCGAACACTGGCTCCCGAAATGGACG   1146

BSNT_01338___   1147 AAAGAAGGCTTCCGCCCGGACGTCGTCATTGTAGACCCGCCAAGAACGGG   1196
                     |||||||||||||||||.|||||.|||||.||.||||||||.|||||.||
RBAM_008250__   1147 AAAGAAGGCTTCCGCCCTGACGTGGTCATCGTCGACCCGCCGAGAACCGG   1196

BSNT_01338___   1197 CTGTGACAGCACGTTCTTGGACACGATCAAAAAAGTCAAACCGAAACGCT   1246
                     |||||||||.||.||.||.||.||.|||||||||||.|||||||||||||
RBAM_008250__   1197 CTGTGACAGAACATTTTTAGATACCATCAAAAAAGTAAAACCGAAACGCT   1246

BSNT_01338___   1247 TTGTCTACGTTTCCTGCAATCCATCCACGCTTGCGAAGGATTTGCAGACG   1296
                     |.||||||||.|||||||||||.|||||.||.|||||.||.|||||||||
RBAM_008250__   1247 TCGTCTACGTATCCTGCAATCCTTCCACACTGGCGAAAGACTTGCAGACG   1296

BSNT_01338___   1297 CTGTCGAAGGACTATCGCGTGGACTATATTCAGCCTGTCGATATGTTTCC   1346
                     ||||||||||||||||||||.||.||||||||||||||.|||||||||||
RBAM_008250__   1297 CTGTCGAAGGACTATCGCGTCGAATATATTCAGCCTGTTGATATGTTTCC   1346

BSNT_01338___   1347 GCAGACGGCGCATGTTGAAGCAGTGGCGAGACTTGTATTGAAATCGTCTA   1396
                     |||.|||||.|||||.|||||.|||||||..||.|||||.||||||||||
RBAM_008250__   1347 GCAAACGGCTCATGTGGAAGCTGTGGCGAAGCTAGTATTAAAATCGTCTA   1396

BSNT_01338___   1397 ACTAA   1401
                     |||||
RBAM_008250__   1397 ACTAA   1401


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.