Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01340 and RBAM_008280

See Amino acid alignment / Visit BSNT_01340 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:02
# Commandline: needle
#    -asequence dna-align/BSNT_01340___yfjN.1.9828.seq
#    -bsequence dna-align/RBAM_008280___yfjN.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01340___yfjN-RBAM_008280___yfjN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01340___yfjN-RBAM_008280___yfjN.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01340___yfjN
# 2: RBAM_008280___yfjN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1005
# Identity:     860/1005 (85.6%)
# Similarity:   860/1005 (85.6%)
# Gaps:          27/1005 ( 2.7%)
# Score: 3828.0
# 
#
#=======================================

BSNT_01340___      1 ATGAAAGGATTTGAATGTATTATGACAGATAATTTCTGGCGTGAATTGCC     50
                                          ||||||||||||||||||||||||||.||
RBAM_008280__      1 ---------------------ATGACAGATAATTTCTGGCGTGAATTACC     29

BSNT_01340___     51 ACGGCCATTTTTTGTACTGGCACCAATGGAAGATGTGACAGATGTTGTTT    100
                     |||||||||||||||||||||||||||||||||||||||.|||||.||||
RBAM_008280__     30 ACGGCCATTTTTTGTACTGGCACCAATGGAAGATGTGACGGATGTCGTTT     79

BSNT_01340___    101 TCCGGCATGTAGTAAGTGAAGCAGGCAGACCGGATGTATTTTTTACAGAG    150
                     |.||.|||||.||.|||||||||||||||||.|||||.|||||.||||||
RBAM_008280__     80 TTCGCCATGTTGTGAGTGAAGCAGGCAGACCTGATGTGTTTTTCACAGAG    129

BSNT_01340___    151 TTCACAAACTCAGAGAGCTATTGCCACCCGGATGGGAAGGATAGTGTGCG    200
                     ||.|||||||||||.||||||||.||||||||||||||||||||||||||
RBAM_008280__    130 TTTACAAACTCAGAAAGCTATTGTCACCCGGATGGGAAGGATAGTGTGCG    179

BSNT_01340___    201 TGGCCGTTTGACGTTTACAGAGGATGAACAGCCAATGGTAGCCCACATAT    250
                     .|||||||||||.||.||.||||||||||||||.|||||.||||||||||
RBAM_008280__    180 CGGCCGTTTGACTTTCACGGAGGATGAACAGCCGATGGTTGCCCACATAT    229

BSNT_01340___    251 GGGGGGATAAGCCTGAAAACTTCCGTAAAATGAGTATTGGCATGGCAGAG    300
                     ||||.|||||||||||||||||.||..|||||||||||||.|||||.||.
RBAM_008280__    230 GGGGAGATAAGCCTGAAAACTTTCGCCAAATGAGTATTGGGATGGCGGAA    279

BSNT_01340___    301 TTAGGATTTAAAGGCTTAGATATCAATATGGGCTGCCCTGTACCTAATGT    350
                     |||||.|||||.|||.|.|||||||||||||||||.||||||||||||||
RBAM_008280__    280 TTAGGGTTTAAGGGCCTGGATATCAATATGGGCTGTCCTGTACCTAATGT    329

BSNT_01340___    351 GGCAGGGAATGGAAAGGGAAGCGGCCTTATTTGCCGTCCTGCAGTGGCGG    400
                     |||.|||||||||||||||||||||||.|||||||||||||.|||.||.|
RBAM_008280__    330 GGCGGGGAATGGAAAGGGAAGCGGCCTGATTTGCCGTCCTGAAGTTGCAG    379

BSNT_01340___    401 CAGAATTAATACAAGCTGCAAAAGCAGGGGGATTGCCTGTAAGCGTGAAG    450
                     |.|||||||||||.||.||.||||||||.||..||||.|||||.||||||
RBAM_008280__    380 CCGAATTAATACAGGCGGCGAAAGCAGGAGGTCTGCCGGTAAGTGTGAAG    429

BSNT_01340___    451 ACAAGACTTGGATACACGGATGTGGATGAATGGCGCGAGTGGCTGACACA    500
                     ||.||||||||.|||||||||.|.||.||||||||||..|||||||||||
RBAM_008280__    430 ACCAGACTTGGCTACACGGATATAGACGAATGGCGCGGCTGGCTGACACA    479

BSNT_01340___    501 CATTTTGAAACAGGATATTGCGAATCTTTCTATTCATCTGCGTACAAGGG    550
                     |||..|||||||.||.||||||||||||||.|||||||||||||||||.|
RBAM_008280__    480 CATACTGAAACAAGACATTGCGAATCTTTCCATTCATCTGCGTACAAGAG    529

BSNT_01340___    551 CAGAAATGAGCAAAGTAGATGCGCATTGGGAGCTCATCCCGGAGATTAAG    600
                     |.||||||||.||||||||||||||||||||||||||||||||.||.|||
RBAM_008280__    530 CGGAAATGAGTAAAGTAGATGCGCATTGGGAGCTCATCCCGGAAATCAAG    579

BSNT_01340___    601 AAACTTCGTGATGAGGTGGCACCAGATACACTGTTGACAATCAACGGAGA    650
                     |||||||||||||||.|.||.||.|||||.||.|||||.|||||.||.||
RBAM_008280__    580 AAACTTCGTGATGAGATAGCGCCGGATACCCTATTGACGATCAATGGGGA    629

BSNT_01340___    651 TATCCCTGACCGCCAAACCGGCTTGAAACTTGCTGAACAATACGGCGTCG    700
                     |||.||||||||..||||||||||||||||.||||||||||||||.||.|
RBAM_008280__    630 TATTCCTGACCGTGAAACCGGCTTGAAACTCGCTGAACAATACGGTGTTG    679

BSNT_01340___    701 ATGGCATTATGATAGGGCGCGGTATTTTTACAAATCCATTTGCCTTTGAA    750
                     |.||.||||||||.||.||.||.||||||||.||||||||.|||||||||
RBAM_008280__    680 ACGGGATTATGATTGGACGAGGCATTTTTACTAATCCATTCGCCTTTGAA    729

BSNT_01340___    751 AAGGAGCCGAAAGAGCATAGCAGCAAGGAATTGCTTGATCTCTTAAGGCT    800
                     ||||||||||.||||||||||||.|||||||||||||||||.||.||..|
RBAM_008280__    730 AAGGAGCCGAGAGAGCATAGCAGTAAGGAATTGCTTGATCTTTTGAGATT    779

BSNT_01340___    801 GCATCTGGATCTTCATGAGAAATATTCAGCATTAGAAGCCCGTCCGTACA    850
                     |||.||||||||||||||..||||||||..|..||||||.||..|.||.|
RBAM_008280__    780 GCACCTGGATCTTCATGATGAATATTCAAAAGCAGAAGCTCGAGCATATA    829

BSNT_01340___    851 AGCCTCTTCCTCGCTTTTTCAAAATTTATCTCCGCGGGTTCCGAGGGGCA    900
                     |.||.||.||.|||||||||||.||.|||||||||||.|||||.||.|||
RBAM_008280__    830 AACCGCTACCCCGCTTTTTCAAGATATATCTCCGCGGATTCCGTGGAGCA    879

BSNT_01340___    901 AGTGAATTAAGAAATCAATGCATGAACACAAAGTCAACAGATGAAGTGCG    950
                     ||||||||||||||||||||||||||.|||||||||||||||||||||||
RBAM_008280__    880 AGTGAATTAAGAAATCAATGCATGAATACAAAGTCAACAGATGAAGTGCG    929

BSNT_01340___    951 TGCATTGCTCGACGACTTTGAGAGAAAGTATCTTGATGGGGTAGAATAA-    999
                     ||||||||||||.|||||||||||||||||||||||||||.|.||..|| 
RBAM_008280__    930 TGCATTGCTCGATGACTTTGAGAGAAAGTATCTTGATGGGATGGAGCAAG    979

BSNT_01340___    999 -----    999
                          
RBAM_008280__    980 AGTGA    984


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