Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01346 and RBAM_008310

See Amino acid alignment / Visit BSNT_01346 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:02
# Commandline: needle
#    -asequence dna-align/BSNT_01346___acoB.1.9828.seq
#    -bsequence dna-align/RBAM_008310___acoB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01346___acoB-RBAM_008310___acoB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01346___acoB-RBAM_008310___acoB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01346___acoB
# 2: RBAM_008310___acoB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1029
# Identity:     933/1029 (90.7%)
# Similarity:   933/1029 (90.7%)
# Gaps:           0/1029 ( 0.0%)
# Score: 4281.0
# 
#
#=======================================

BSNT_01346___      1 ATGGCGAGAGTCATAAGCATGTCAGACGCGATCAATGAAGCAATGAAGCT     50
                     |||||||||||||||||||||||.||||||||||||||||||||||||||
RBAM_008310__      1 ATGGCGAGAGTCATAAGCATGTCGGACGCGATCAATGAAGCAATGAAGCT     50

BSNT_01346___     51 TGCGATGAGAAGAGATGAAAATGTGCTTTTGATCGGTGAGGATGTCGCCG    100
                     |||||||||||.|||.||.|||||||||.|.||||||||.||||||||||
RBAM_008310__     51 TGCGATGAGAAAAGACGACAATGTGCTTGTAATCGGTGAAGATGTCGCCG    100

BSNT_01346___    101 GGGGAGCGGCTGTCGATCATTTGCAGGATGATGAAGCATGGGGCGGTGTA    150
                     ||||||||||.||||||||.|||||.||||||||||||||||||||||||
RBAM_008310__    101 GGGGAGCGGCGGTCGATCACTTGCAAGATGATGAAGCATGGGGCGGTGTA    150

BSNT_01346___    151 TTAGGGGTCACAAAGGGGCTCGTACAGGAATTCGGGCGTACAAGAGTGCT    200
                     .|.||||||||||||||||||||||||||||||||..|.|..||.|||||
RBAM_008310__    151 CTGGGGGTCACAAAGGGGCTCGTACAGGAATTCGGCAGAAGCAGGGTGCT    200

BSNT_01346___    201 GGACACACCGATTTCTGAGGCGGGCTATATGGGTGCGGCTATGGCTGCGG    250
                     |||||||||.|||||||||||||||||.|||||||||||.||||||||||
RBAM_008310__    201 GGACACACCAATTTCTGAGGCGGGCTACATGGGTGCGGCCATGGCTGCGG    250

BSNT_01346___    251 CATCAACCGGTTTGAGACCGATTGCCGAGCTGATGTTTAACGATTTTATC    300
                     ||||.||.||..|||||||||||||.||.|||||||||||||||||||||
RBAM_008310__    251 CATCCACGGGGCTGAGACCGATTGCGGAACTGATGTTTAACGATTTTATC    300

BSNT_01346___    301 GGCACGTGCTTTGACCAGGTGATCAACCAAGGGGCGAAATTCCGTTACAT    350
                     ||.||||||||||||||.||||||||||||||||||||||||||.||.||
RBAM_008310__    301 GGAACGTGCTTTGACCAAGTGATCAACCAAGGGGCGAAATTCCGCTATAT    350

BSNT_01346___    351 GTTTGGCGGAAAAGCGCAAGTGCCGATTACCGTCCGCACCACATACGGAG    400
                     |||.|||||.|||||||||||||||||.||||||||||||||||||||||
RBAM_008310__    351 GTTCGGCGGTAAAGCGCAAGTGCCGATCACCGTCCGCACCACATACGGAG    400

BSNT_01346___    401 CAGGGTTCCGGGCCGCTGCCCAGCATTCACAAGCGCTGTATGGCCTTTTC    450
                     |.||.||||||||.||.||.||||||||.||.||||||||||||||.|||
RBAM_008310__    401 CCGGATTCCGGGCAGCCGCTCAGCATTCGCAGGCGCTGTATGGCCTGTTC    450

BSNT_01346___    451 ACGAGCATCCCTGGACTGAAGACAGTTGTTCCATCCAATCCGTATGATGC    500
                     ||.||||||||.||.||||||||.|||||.||.||||||||.|||||.||
RBAM_008310__    451 ACCAGCATCCCGGGTCTGAAGACGGTTGTGCCGTCCAATCCATATGACGC    500

BSNT_01346___    501 CAAAGGTCTTCTGCTTGCAGCAATAGAAGATAATGATCCGGTGTTCTTCT    550
                     |||||||.|.||||||.|.|||||||||||.|||||||||||.|||||.|
RBAM_008310__    501 CAAAGGTTTGCTGCTTTCGGCAATAGAAGACAATGATCCGGTATTCTTTT    550

BSNT_01346___    551 TTGAAGACAAAACGTCCTACAACATGAAGGGCGAGGTGCCGGAAGATTAT    600
                     |||||||.||||||||||||||||||||||||||||||||||||||||||
RBAM_008310__    551 TTGAAGATAAAACGTCCTACAACATGAAGGGCGAGGTGCCGGAAGATTAT    600

BSNT_01346___    601 TATACAATTCCCCTTGGAAAAGCGGATATCAAACGCGAGGGCAATGATGT    650
                     |||||||||||.||.|||||||||||||||||||||||.||||..||..|
RBAM_008310__    601 TATACAATTCCGCTCGGAAAAGCGGATATCAAACGCGAAGGCAGCGACAT    650

BSNT_01346___    651 TACGCTCTTTGCAGTCGGCAAGCAGGTCAATACTGCGCTTGAAGCGGCTG    700
                     .||.||.|||||.|||||||||||||||||||||||||||||||||||||
RBAM_008310__    651 CACACTGTTTGCGGTCGGCAAGCAGGTCAATACTGCGCTTGAAGCGGCTG    700

BSNT_01346___    701 CACAGCTTTCAGAGAGGGGCATCGAAGCCGAGGTCCTTGATCCGCGCAGT    750
                     |.||||||||.||||..||||||||.||||||||.||||||||.||.|||
RBAM_008310__    701 CGCAGCTTTCTGAGAAAGGCATCGACGCCGAGGTGCTTGATCCCCGGAGT    750

BSNT_01346___    751 CTGTCCCCTCTGGATGAGGATGCGATTTTCACATCGTTAGAAAAAACAAA    800
                     |||||.|||.|.||||||||.|||||||||||||||||||||||||||||
RBAM_008310__    751 CTGTCTCCTTTAGATGAGGAAGCGATTTTCACATCGTTAGAAAAAACAAA    800

BSNT_01346___    801 TCGTCTGATCATCATTGATGAAGCCAATCCGCGATGCAGCATTGCCACGG    850
                     .||.||||||||||||||.||||||||||||||.||||||||.|||||||
RBAM_008310__    801 CCGGCTGATCATCATTGACGAAGCCAATCCGCGCTGCAGCATCGCCACGG    850

BSNT_01346___    851 ATATTGCTGCGCTTGTCGCTGACAAGGGCTTTGATTTGCTTGATGCGCCG    900
                     |||||||||||.|||||||.||.|||||||||||||||||||||||||||
RBAM_008310__    851 ATATTGCTGCGATTGTCGCCGATAAGGGCTTTGATTTGCTTGATGCGCCG    900

BSNT_01346___    901 ATTAAACGGATTACAGCGCCGCATACACCGGTTCCGTTTTCACCAGTGCT    950
                     |||||||||||||||||||||||||||||.||.||||||||.||.|||||
RBAM_008310__    901 ATTAAACGGATTACAGCGCCGCATACACCAGTGCCGTTTTCGCCGGTGCT    950

BSNT_01346___    951 TGAAGATCAATATTTGCCGACACCAGATAAAATTGTCAGCGTCACGCTTG   1000
                     ||||||||||||||||||||||.||||..|||||||||||||||||||||
RBAM_008310__    951 TGAAGATCAATATTTGCCGACATCAGACCAAATTGTCAGCGTCACGCTTG   1000

BSNT_01346___   1001 AATTGCTTGGCGAGCCGGCAATGAATTAA   1029
                     |||||||||||||||||||||||||||||
RBAM_008310__   1001 AATTGCTTGGCGAGCCGGCAATGAATTAA   1029


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