Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01347 and RBAM_008320

See Amino acid alignment / Visit BSNT_01347 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:03
# Commandline: needle
#    -asequence dna-align/BSNT_01347___acoC.1.9828.seq
#    -bsequence dna-align/RBAM_008320___acoC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01347___acoC-RBAM_008320___acoC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01347___acoC-RBAM_008320___acoC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01347___acoC
# 2: RBAM_008320___acoC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1269
# Identity:     873/1269 (68.8%)
# Similarity:   873/1269 (68.8%)
# Gaps:         147/1269 (11.6%)
# Score: 2944.0
# 
#
#=======================================

BSNT_01347___      1 ATGGCGGTAAAAGTAGTGATGCCAAAATTGGGAATGGCCATGAAACAAGG     50
                     |||||.|||||||||||.|||||.||..||||||||||.|||||..||||
RBAM_008320__      1 ATGGCTGTAAAAGTAGTAATGCCGAAGCTGGGAATGGCGATGAAGAAAGG     50

BSNT_01347___     51 GGAAGTATCGATATGGAATAAAAAAGTAGGCGACCCGGTTGAAAAGGGAG    100
                     .||||||||..|.||||||||||||||.||||||||||||||||||||||
RBAM_008320__     51 TGAAGTATCCGTCTGGAATAAAAAAGTCGGCGACCCGGTTGAAAAGGGAG    100

BSNT_01347___    101 AAAGCATTGCCAGCATTCAA-TCGGAGAAAATTGAAATGGAGATCGAAGC    149
                     |||||||.||||||| |||| |||||.|||||.||||||||.||.|||||
RBAM_008320__    101 AAAGCATCGCCAGCA-TCAACTCGGAAAAAATAGAAATGGAAATAGAAGC    149

BSNT_01347___    150 GCCTGAAAAAGGAACGCTGATCGATATCAAAGTGAAAGAGGGAGAAGAGG    199
                     ||||||||..||.|||||..||.||||.|||||.|||||||||||||..|
RBAM_008320__    150 GCCTGAAAGCGGCACGCTTCTCCATATTAAAGTCAAAGAGGGAGAAGGAG    199

BSNT_01347___    200 TTCCGCCCGGCACAGCGATCTGCTATATCGGGG---ACGCCAATGAGTCG    246
                     |.|||||.||.||..|.|||||.||||||||||   |||.|.|.||   .
RBAM_008320__    200 TCCCGCCGGGAACGCCCATCTGTTATATCGGGGAAAACGGCGAAGA---A    246

BSNT_01347___    247 GTGCAGGAAGAGGCGAGCGCGCCTGTTGCTGAAGACAAT------ATGCC    290
                     ||||.|||..|||.|   |||||.|.|.|||||   |||      |..||
RBAM_008320__    247 GTGCTGGAGAAGGAG---GCGCCGGCTCCTGAA---AATGCAGGGAAACC    290

BSNT_01347___    291 GCAAGCCGTTCAGCCCGTCAAACAAGAAAACAAACCCGC------AGCC-    333
                     ||||.|.|            |||..|||.|.|..|||||      |||| 
RBAM_008320__    291 GCAATCTG------------AACCTGAACATATTCCCGCTCCCAAAGCCG    328

BSNT_01347___    334 TCCAAA-----AAAGATCGAATGAAAATATCTCCAGTCGCCAGGAAAATA    378
                     |.||||     |||.|.||..|||||||||||||.||.|||.|.|||||.
RBAM_008320__    329 TGCAAAAGCGTAAACACCGCGTGAAAATATCTCCCGTTGCCCGAAAAATG    378

BSNT_01347___    379 GCAGAAAAAGCAGGATT-AGACCTAAAACAACTGAAAGGAACTGGACCAG    427
                     ||.||.|||||.||.|| |.|..|.|||| .|||||.||.||.||.||.|
RBAM_008320__    379 GCGGAGAAAGCCGGGTTGAAAGTTGAAAC-GCTGAACGGGACGGGGCCCG    427

BSNT_01347___    428 GCGGACGAATCGTGAAGGATGACGTAACAAAGGCTCTT----------GC    467
                     |.||..|||||||.||.|.||||||.|..||||| |.|          ||
RBAM_008320__    428 GAGGCAGAATCGTAAAAGCTGACGTCATCAAGGC-CATGAAGACGGAAGC    476

BSNT_01347___    468 TGAACAGAAAAAAGATCAGGCAAAGCCTGTGTCGGAGCAGA------AAG    511
                     |||||.|         |||.|         .||||..||||      |..
RBAM_008320__    477 TGAACCG---------CAGTC---------TTCGGTTCAGACGGCACAGC    508

BSNT_01347___    512 CGCAGGAAATCCCGGTGACAGGCATGAGAAAGGTCATCGCTGCCCGAATG    561
                     ||.||||||..||||...|||..||||||||.|||||.||.|.|||||||
RBAM_008320__    509 CGGAGGAAAAACCGGCTTCAGCGATGAGAAAAGTCATTGCAGACCGAATG    558

BSNT_01347___    562 CAGGAAAGCTTGGCAAACAGCGCGCAGCTGACGATCACGATGAAAGCTGA    611
                     ||..|||||.||..|||||||||.|||||||||.|.||.||||||||.||
RBAM_008320__    559 CACAAAAGCCTGCAAAACAGCGCCCAGCTGACGTTGACTATGAAAGCGGA    608

BSNT_01347___    612 TATCACCAAGCTTGCCACTCTTCAAA-------AACAGCTTTCACCAACT    654
                     .||.||..||||||       |.|||       |.||||  ||.||.||.
RBAM_008320__    609 CATTACGGAGCTTG-------TAAAATGGCAGGAGCAGC--TCGCCGACA    649

BSNT_01347___    655 GCG-GAAGA----GAGATACGGCACAAAACTGACGATCACTCATTTTGTC    699
                     ||| |||.|    |||   |||....|||||||||.||||.|||||.||.
RBAM_008320__    650 GCGCGAAAAAGCGGAG---CGGTGTTAAACTGACGGTCACACATTTCGTA    696

BSNT_01347___    700 TCAAGAGCCGCCGTTCTCGCTCTGCAAGCTCACCCTGTGCTGAACAGCTT    749
                     ||..|.|||||.||.||.||.|||.||...||.||||.|||||||||||.
RBAM_008320__    697 TCCCGGGCCGCGGTGCTTGCGCTGAAACAGCATCCTGAGCTGAACAGCTC    746

BSNT_01347___    750 TTATCAAAATGAGCGCATCATCACACATCCCCATGTGCACCTTGGTATGG    799
                     |||||||.|.|||||.||||||||..||||..||||.||||||||.||||
RBAM_008320__    747 TTATCAAGAGGAGCGGATCATCACCTATCCATATGTCCACCTTGGGATGG    796

BSNT_01347___    800 CTGTAGC-CTTGGAAAATGGCTTAGTGGTGCCTGTCATCCGCCATGCTGA    848
                     |.||..| ||| |||||.||..|.||.|||||.||.||.||..||||.||
RBAM_008320__    797 CGGTTTCTCTT-GAAAACGGTCTCGTCGTGCCGGTGATTCGGGATGCGGA    845

BSNT_01347___    849 AAAGCTATCGCTGATAGAACT---GGCTCAATCTATC-TCAGAAAAT-GC    893
                     ||||||.||..|..|.||.||   ||.|||      | ||||.|.|| | 
RBAM_008320__    846 AAAGCTTTCATTCCTTGAGCTTGCGGATCA------CATCAGCACATCG-    888

BSNT_01347___    894 CAAAAAAGCACGCGAGGGACGTGCGGGAA-------------GCGAAGAA    930
                            ||||||..|    |.|||||||             |.||.||.
RBAM_008320__    889 -------GCACGCCGG----GCGCGGGAAGGCAATGCTTCCGGAGATGAT    927

BSNT_01347___    931 CTGCAAGGATCTACTTTCTCCATTACAAACCTTGGCGCGTT-TGGAGTTG    979
                     |||||.|||||.||.||.||.||||||||.||.|| |.||| .|||.|||
RBAM_008320__    928 CTGCACGGATCGACATTTTCTATTACAAATCTCGG-GGGTTACGGAATTG    976

BSNT_01347___    980 AGCATTTCACACCGATACTAAATCCGCCGGAAACAGGCATTCTCGGCATC   1029
                     ||||||||||.|||||.||.||||||||.|||.|.||.||||||||..|.
RBAM_008320__    977 AGCATTTCACCCCGATTCTTAATCCGCCTGAAGCCGGTATTCTCGGAGTG   1026

BSNT_01347___   1030 GGAGCAAGCTATGACACGCCGGTGTATCAAGGGGAGGAGATCGTCAGAAG   1079
                     ||.|||||||||||.|||||.|.||.|.||||.||.|||.|.||||.|||
RBAM_008320__   1027 GGCGCAAGCTATGAAACGCCTGCGTTTAAAGGAGATGAGCTTGTCAAAAG   1076

BSNT_01347___   1080 CACGATCCTGCCACTCAGCCTGACATTTGATCACAGAGCGTGTGACGGCG   1129
                     |||.||.|||||.||.|||||.||.|||||||||||||..|||||||||.
RBAM_008320__   1077 CACCATGCTGCCGCTGAGCCTTACCTTTGATCACAGAGTATGTGACGGCT   1126

BSNT_01347___   1130 CCCCTGCCGCTGCATTCCTGAAGGCGATGAAAAC-ATATTTGGAAGAACC   1178
                     |.||.||.||.|..||||||||..||.|.|||.| .|..|| |||||.||
RBAM_008320__   1127 CACCGGCTGCGGACTTCCTGAAAACGGTCAAAGCGCTGCTT-GAAGAGCC   1175

BSNT_01347___   1179 CGCAGCATTAATTTTATAG   1197
                     .||.|.|||.|||||||||
RBAM_008320__   1176 GGCCGGATTGATTTTATAG   1194


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