Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01349 and RBAM_008330

See Amino acid alignment / Visit BSNT_01349 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:03
# Commandline: needle
#    -asequence dna-align/BSNT_01349___acoL.1.9828.seq
#    -bsequence dna-align/RBAM_008330___acoL.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01349___acoL-RBAM_008330___acoL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01349___acoL-RBAM_008330___acoL.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01349___acoL
# 2: RBAM_008330___acoL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1443
# Identity:     999/1443 (69.2%)
# Similarity:   999/1443 (69.2%)
# Gaps:         129/1443 ( 8.9%)
# Score: 3252.5
# 
#
#=======================================

BSNT_01349___      1 ATGACATTAGCCATTATCGGCGGCGGACCTGCAGGCTATGCGGCTGCGGT     50
                     .|||||.|||||||||||||||||||.|||||.||.|||||.|||||.||
RBAM_008330__      1 TTGACACTAGCCATTATCGGCGGCGGGCCTGCCGGATATGCAGCTGCCGT     50

BSNT_01349___     51 TTCCGCGGCACAGCAGGGCAGAA-ACGTGCTGCTTATTGACAAAGGCAAG     99
                     ..|.||.||.| |.||||.|||| |.||..|.||.||.||||||||...|
RBAM_008330__     51 GACTGCCGCGC-GGAGGGGAGAAGAAGTCGTTCTGATCGACAAAGGGCCG     99

BSNT_01349___    100 CTTGGAGGGACCTGCCTGAATGAAGGCTGCATCCCGACAAAGTCTTTGTT    149
                     ||.|||||.||.||.||.|||||.||.|||||||||||||||||..|.||
RBAM_008330__    100 CTCGGAGGCACTTGTCTCAATGAGGGGTGCATCCCGACAAAGTCGCTTTT    149

BSNT_01349___    150 AGAAAGCGCAAACGTTCTTGATAAAATCAAGCATGCCGACAGCTTTGGAA    199
                     .||||||||.||.||.||.||||||||||.|||.||.||.|..||.||.|
RBAM_008330__    150 GGAAAGCGCGAATGTGCTCGATAAAATCAGGCACGCAGATACATTCGGCA    199

BSNT_01349___    200 TCGAACTTCCGGCAGGTGCGATAT--CAGTCGATTGGAGTAAAATGCAAA    247
                     |||||||.|||..|     .|.||  ||.||.|||||......|||||..
RBAM_008330__    200 TCGAACTGCCGCAA-----AACATTACACTCAATTGGGCCCGCATGCAGG    244

BSNT_01349___    248 GCCGGAAACAACAGGTTGTCAGTCAGCTTGTCCAAGGCGTTCAGTACCTA    297
                     |.||.||||..||..|.|||||.|||||.||.||.||..||||.|||.||
RBAM_008330__    245 GGCGCAAACGGCAAATCGTCAGCCAGCTCGTGCAGGGAATTCAATACTTA    294

BSNT_01349___    298 ATGAAGAAAAATCAAATACAGGTTGTAAAG--------GGAACAGCCTCC    339
                     |||||...||||||.||        |||||        ||.|||||.||.
RBAM_008330__    295 ATGAAAGCAAATCAGAT--------TAAAGTCATCAGCGGGACAGCTTCA    336

BSNT_01349___    340 TTTCTTTCTGA-AAGAAAGCTCTTGATC---GAAGGAGAAAAAGG---AA    382
                     |||||..|.|| .|||.|    |||.||   |||||||||..|||   ||
RBAM_008330__    337 TTTCTCACAGAGCAGACA----TTGCTCGTTGAAGGAGAAGGAGGCGCAA    382

BSNT_01349___    383 AAGA-AATCAGAGAGGCGGACCAAGTATTGATTGCCTCCGGATCAGAGCC    431
                     |||| |.||.| ||.|||||.|...||||||||||.||||||||.||.||
RBAM_008330__    383 AAGACATTCTG-GAAGCGGATCGGATATTGATTGCATCCGGATCTGAACC    431

BSNT_01349___    432 AATCGAGCTGCCTTTCGCCCCGTTTGACGGCGAATGGATCCTCGACAGCA    481
                     ....||||||||.||.|||||.|||||||||||.|||.|..|||||||||
RBAM_008330__    432 GGCGGAGCTGCCGTTTGCCCCATTTGACGGCGATTGGGTGATCGACAGCA    481

BSNT_01349___    482 AAGACGCGCTTTCTCTTTCCG-AGATTCCGTCTTCACTAGTCATTGTCGG    530
                     |||||||||||||| ||.|.| |.||.||.|||||.||..|.||||||||
RBAM_008330__    482 AAGACGCGCTTTCT-TTACAGAAAATCCCTTCTTCTCTGCTTATTGTCGG    530

BSNT_01349___    531 CGGCGGTGTCATCGGGTGTGAGTATGCAGGGCTGTT-----CGCCAGATT    575
                     .||.|||||.|||||.|||||.|.|||    ||.||     .||| |.||
RBAM_008330__    531 GGGAGGTGTGATCGGCTGTGAATTTGC----CTCTTTATTCAGCC-GGTT    575

BSNT_01349___    576 GGGATCGAAGGTGACCATCATTGAAACAGCGGACCAGCTGATCCCGGCTG    625
                     ...|.||||.|||||..|.||||||.|.||.||||.||||.|||||||.|
RBAM_008330__    576 TAAAACGAAAGTGACGGTGATTGAATCGGCTGACCGGCTGCTCCCGGCAG    625

BSNT_01349___    626 AAGACGAAGATATTGCCCGTCTTTTTCAGGAGAAACTTGAGGAAGA---C    672
                     ||||||.|||.||.| |||.|.||||| |.|||..|||.|.| |||   |
RBAM_008330__    626 AAGACGGAGAAATCG-CCGCCGTTTTC-GAAGACTCTTTAAG-AGACAGC    672

BSNT_01349___    673 GGTGTCGAAGTGCATAC--------CTCATC--CAGATT-----AGAACG    707
                     ||.|..||..|.||.||        |.|.||  |.||||     ||||.|
RBAM_008330__    673 GGGGCTGATATTCAGACGAAAGCCGCCCTTCAGCGGATTGACAAAGAAAG    722

BSNT_01349___    708 GGTGGATCAAACGGCCAAAACGGCAATATGG--AAAAG-CGGTCAGCGAG    754
                     |               |||||.||..|.|||  ||||| |||..|   ||
RBAM_008330__    723 G---------------AAAACCGCGGTGTGGACAAAAGACGGCAA---AG    754

BSNT_01349___    755 AGTTTAAAACGAAGGCCGATTATGTGCTGGTGGCGATCGGCAGAAAACCC    804
                     |..||.|..|..||||.|||.|.||..||||.||.|||||.|||||.||.
RBAM_008330__    755 AAATTGAGGCTCAGGCTGATCACGTTTTGGTTGCAATCGGGAGAAAGCCG    804

BSNT_01349___    805 CGTCTTG-ACGGATTACAGCTTGAACAGGCCGGAGTTGAT----TTTTCT    849
                     ||| ||| |.||.||..|.||.||.||||||||    .||    |.||||
RBAM_008330__    805 CGT-TTGCATGGCTTGAATCTGGAGCAGGCCGG----CATCCGGTATTCT    849

BSNT_01349___    850 CCAAAGGGCATTCCGGTGAATGGGCACATGCAGACGAACGTGCCTCATAT    899
                     ||....||||||...||.||||..||.||||||||.||.|||||||||||
RBAM_008330__    850 CCGCGCGGCATTGAAGTCAATGACCATATGCAGACCAATGTGCCTCATAT    899

BSNT_01349___    900 TTACGCGTGCGGAGATGCTATAGGGGGCATTCAGCTCGCGCATGCCGCTT    949
                     .|||||.|||||.|||||....||.||.||.|||||||||||||||||..
RBAM_008330__    900 ATACGCATGCGGCGATGCGGCCGGAGGAATGCAGCTCGCGCATGCCGCCA    949

BSNT_01349___    950 TCCATGAGGGCATCATCGCTGCTTCTCATGCTTCCGGAAGGGATGTCAAA    999
                     |.|||||.||.||||..||.||..|.|||||.||.||||.||||..||||
RBAM_008330__    950 TTCATGAAGGAATCACAGCCGCCGCGCATGCCTCGGGAAAGGATAGCAAA    999

BSNT_01349___   1000 ATCAATGAGAAACAT---GTGCCGCGCTGCATCTATACGTCCCCAGAAAT   1046
                     .|||||   |..|||   |||||.|||||.||.|||||.||.||.|||||
RBAM_008330__   1000 GTCAAT---ATGCATGCGGTGCCCCGCTGTATTTATACATCGCCGGAAAT   1046

BSNT_01349___   1047 CGCGTGTATCGGAATGACAGAACGACAGGCAAGAAGA-ATATACGGCGAT   1095
                     .||...|.||||..||||.|||..||||||.|| ||| |.||||||.|||
RBAM_008330__   1047 GGCCGCTGTCGGGCTGACGGAAACACAGGCGAG-AGAGACATACGGAGAT   1095

BSNT_01349___   1096 GTGAAAATTGGCGAATTTCCTTTTTCCGCAAACGGCAAGGCGCTCATTAA   1145
                     ||||||||.||.||||...|.|||||.||.|||||.||.|||.|.|||||
RBAM_008330__   1096 GTGAAAATCGGAGAATGCTCATTTTCTGCTAACGGAAAAGCGTTAATTAA   1145

BSNT_01349___   1146 ACAGCA----AGCGGAAGGAAAGGTCAAAATCATGGCTGAACCGGAATTC   1191
                     |||.||    .||||.|  |||  |.||||||||.||.||||||||||||
RBAM_008330__   1146 ACATCAGCATGGCGGCA--AAA--TGAAAATCATTGCCGAACCGGAATTC   1191

BSNT_01349___   1192 GGCGAAATCGTGGGTGTCTCGATGATTGGCCCGGATGTAACCGAGCTCAT   1241
                     ||.||||||||.||.||.||.|||||.||.|||||.||.||.||..|.||
RBAM_008330__   1192 GGAGAAATCGTCGGCGTGTCAATGATCGGGCCGGACGTGACGGAATTGAT   1241

BSNT_01349___   1242 CGGCCAAGCGG-CAGCGATCATGAATGGTGAGATGACGGCAGATATGGCG   1290
                     |||.||.|||| || .|||.|||||.|||||.||||||||.||||||.||
RBAM_008330__   1242 CGGTCAGGCGGTCA-TGATGATGAACGGTGAAATGACGGCTGATATGTCG   1290

BSNT_01349___   1291 GAGCATTTTATCGCCGCCCATCCGACTTTATCGGAAACATTGCATGAGGC   1340
                     |||||.||||||||.||.|||||||||.|.||.|||||..|.||.||.||
RBAM_008330__   1291 GAGCACTTTATCGCGGCGCATCCGACTCTGTCAGAAACGCTTCAGGAAGC   1340

BSNT_01349___   1341 GCTGTTAA---GCACGATCGGCCTTGCGGTACAT---GCATAA   1377
                     .|||.|.|   .|||   |||.||||||||.|||   |.||||
RBAM_008330__   1341 CCTGCTGAATGTCAC---CGGACTTGCGGTGCATTCCGTATAA   1380


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